Variant report

Variant	rs56713904
Chromosome Location	chr11:32920565-32920566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32919329..32924286-chr11:32926573..32930323,7	K562	blood:
2	chr11:32919542..32926976-chr11:32927671..32932534,9	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1022586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10767975	0.82[AFR][1000 genomes]
rs16923607	1.00[AMR][1000 genomes]
rs57091563	1.00[AMR][1000 genomes]
rs58219633	1.00[AMR][1000 genomes]
rs58961816	1.00[AMR][1000 genomes]
rs60956326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118746	1.00[AMR][1000 genomes]
rs7395350	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7482943	1.00[AMR][1000 genomes]
rs7939101	0.86[AFR][1000 genomes]
rs7940077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32915800-32923200	Weak transcription	Lung	lung
2	chr11:32915800-32923200	Weak transcription	Spleen	Spleen
3	chr11:32916000-32921400	Weak transcription	Small Intestine	intestine
4	chr11:32916000-32923000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:32916000-32923200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:32916000-32923200	Weak transcription	Esophagus	oesophagus
7	chr11:32916000-32923400	Weak transcription	Left Ventricle	heart
8	chr11:32916000-32953200	Weak transcription	Pancreas	Pancrea
9	chr11:32916200-32920800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:32916200-32921200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:32916200-32922400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:32916200-32923200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:32916200-32926800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:32916200-32932400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:32916200-32935200	Weak transcription	Aorta	Aorta
16	chr11:32916200-32953200	Weak transcription	Right Ventricle	heart
17	chr11:32916400-32920800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:32916400-32920800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:32916400-32920800	Weak transcription	Fetal Intestine Large	intestine
20	chr11:32916400-32922000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:32916400-32922600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:32916400-32923200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr11:32916400-32923400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:32916400-32925800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:32916400-32925800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:32916400-32926600	Weak transcription	Adipose Nuclei	Adipose
27	chr11:32916400-32926600	Weak transcription	Osteobl	bone
28	chr11:32916400-32940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:32916400-32952800	Weak transcription	Fetal Intestine Small	intestine
30	chr11:32916400-32953200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:32916400-32953400	Weak transcription	NHLF	lung
32	chr11:32916400-32953600	Weak transcription	NHDF-Ad	bronchial
33	chr11:32916600-32920800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:32916600-32940600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:32917000-32920800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr11:32917000-32921000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:32917000-32921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:32917000-32923000	Weak transcription	NHEK	skin
39	chr11:32917000-32925800	Weak transcription	Liver	Liver
40	chr11:32917000-32929600	Weak transcription	HUVEC	blood vessel
41	chr11:32917000-32936000	Weak transcription	Thymus	Thymus
42	chr11:32917000-32952800	Weak transcription	Primary B cells from cord blood	blood
43	chr11:32917200-32920600	Weak transcription	Primary T cells from cord blood	blood
44	chr11:32917200-32920800	Weak transcription	NH-A	brain
45	chr11:32917200-32921200	Weak transcription	Brain Angular Gyrus	brain
46	chr11:32917200-32923000	Weak transcription	Psoas Muscle	Psoas
47	chr11:32917200-32926600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:32917400-32920800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:32917400-32920800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:32917400-32921000	Weak transcription	Brain Germinal Matrix	brain

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