Variant report

Variant	rs7118746
Chromosome Location	chr11:32852291-32852292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32851501..32854370-chr11:32879596..32881538,2	MCF-7	breast:
2	chr11:32849868..32852880-chr11:32911360..32916794,6	MCF-7	breast:
3	chr11:32850001..32854483-chr11:32912810..32915962,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1022586	1.00[AMR][1000 genomes]
rs16923607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56713904	1.00[AMR][1000 genomes]
rs57091563	1.00[AMR][1000 genomes]
rs58219633	1.00[AMR][1000 genomes]
rs58961816	1.00[AMR][1000 genomes]
rs60956326	1.00[AMR][1000 genomes]
rs7117497	1.00[AMR][1000 genomes]
rs7395350	1.00[AMR][1000 genomes]
rs7482943	1.00[AMR][1000 genomes]
rs7940077	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv897192	chr11:32828760-32903263	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv897193	chr11:32838288-32903263	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32850600-32852400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr11:32850600-32852400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr11:32850600-32852400	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr11:32850600-32852400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:32850600-32852400	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr11:32850600-32852400	Active TSS	Rectal Smooth Muscle	rectum
7	chr11:32850600-32852800	Active TSS	Duodenum Mucosa	Duodenum
8	chr11:32850600-32853000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr11:32850800-32852400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr11:32850800-32852400	Bivalent/Poised TSS	Thymus	Thymus
11	chr11:32850800-32852800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:32850800-32852800	Bivalent/Poised TSS	Fetal Kidney	kidney
13	chr11:32850800-32853000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr11:32850800-32853000	Active TSS	Esophagus	oesophagus
15	chr11:32851000-32852400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:32851000-32852400	Active TSS	Fetal Intestine Large	intestine
17	chr11:32851200-32852400	Active TSS	Rectal Mucosa Donor 31	rectum
18	chr11:32851600-32852400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:32851600-32852600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:32851800-32852800	Flanking Active TSS	HMEC	breast
21	chr11:32852000-32852400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr11:32852000-32852400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
23	chr11:32852000-32852400	Enhancers	Brain Substantia Nigra	brain
24	chr11:32852000-32852400	Bivalent Enhancer	Colon Smooth Muscle	Colon
25	chr11:32852000-32852400	Flanking Bivalent TSS/Enh	A549	lung
26	chr11:32852000-32852400	Active TSS	GM12878-XiMat	blood
27	chr11:32852000-32852600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr11:32852000-32852800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr11:32852000-32852800	Flanking Active TSS	NHEK	skin
30	chr11:32852000-32853400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:32852000-32862000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:32852200-32852400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
33	chr11:32852200-32852400	Active TSS	Primary B cells from cord blood	blood
34	chr11:32852200-32852400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:32852200-32852400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
36	chr11:32852200-32852400	Active TSS	Fetal Intestine Small	intestine
37	chr11:32852200-32852600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
38	chr11:32852200-32852600	Active TSS	Placenta	Placenta
39	chr11:32852200-32852600	Enhancers	Placenta Amnion	Placenta Amnion
40	chr11:32852200-32852800	Enhancers	Stomach Mucosa	stomach
41	chr11:32852200-32852800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
42	chr11:32852200-32852800	Flanking Active TSS	Hela-S3	cervix
43	chr11:32852200-32852800	Enhancers	HepG2	liver
44	chr11:32852200-32853000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:32852200-32853000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:32852200-32853200	Flanking Active TSS	Liver	Liver
47	chr11:32852200-32855600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:32852200-32876800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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