Variant report

Variant	rs16923725
Chromosome Location	chr8:59628605-59628606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16923723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16923726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61507954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73247339	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7829638	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834774	0.86[MKK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs7839151	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7840141	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025575	chr8:59609825-59632135	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59625600-59628800	Enhancers	Fetal Intestine Large	intestine
2	chr8:59626000-59629000	Enhancers	Fetal Intestine Small	intestine
3	chr8:59626600-59628800	Enhancers	Primary T cells from cord blood	blood
4	chr8:59626800-59628800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr8:59626800-59629200	Enhancers	Fetal Thymus	thymus
6	chr8:59627000-59634600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:59627200-59634800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr8:59627200-59634800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr8:59628000-59628800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr8:59628000-59628800	Flanking Active TSS	Dnd41	blood
11	chr8:59628200-59628800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr8:59628200-59628800	Enhancers	Primary hematopoietic stem cells	blood
13	chr8:59628200-59628800	Enhancers	K562	blood
14	chr8:59628200-59629000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:59628600-59636600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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