Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:59623611..59626504-chr8:59628202..59631165,3	K562	blood:
2	chr8:59569876..59571753-chr8:59630523..59633280,2	K562	blood:
3	chr8:59569876..59572036-chr8:59629639..59633280,4	K562	blood:

Variant related genes	Relation type
ENSG00000035681	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16923682	1.00[JPT][hapmap]
rs16923723	0.91[AFR][1000 genomes]
rs16923725	0.91[AFR][1000 genomes]
rs16923726	0.87[AFR][1000 genomes]
rs16923727	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16923729	0.96[ASN][1000 genomes]
rs16923739	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16923744	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2634496	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2693438	1.00[EUR][1000 genomes]
rs2693440	1.00[EUR][1000 genomes]
rs2693448	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2726576	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4451296	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60465911	0.91[AFR][1000 genomes]
rs61507954	0.95[AFR][1000 genomes]
rs73247339	0.85[AFR][1000 genomes]
rs7829638	0.89[YRI][hapmap];0.95[AFR][1000 genomes]
rs7839151	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs7840141	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025575	chr8:59609825-59632135	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59627000-59634600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr8:59627200-59634800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr8:59627200-59634800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:59628600-59636600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:59628800-59634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:59629200-59634000	Weak transcription	Dnd41	blood
7	chr8:59629200-59634600	Weak transcription	Fetal Thymus	thymus

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