Variant report

Variant	rs16923729
Chromosome Location	chr8:59636601-59636602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16923682	1.00[JPT][hapmap]
rs16923727	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16923739	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16923744	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2634496	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2693438	0.84[AMR][1000 genomes]
rs2693440	0.84[AMR][1000 genomes]
rs2693448	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2726576	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4451296	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7840141	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59634000-59636800	Weak transcription	HMEC	breast
2	chr8:59634000-59638000	Enhancers	Dnd41	blood
3	chr8:59634200-59636800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:59634400-59637200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:59634400-59637400	Enhancers	Primary T cells from cord blood	blood
6	chr8:59634400-59637600	Enhancers	Primary B cells from peripheral blood	blood
7	chr8:59634400-59637600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:59634600-59636800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:59634600-59637000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:59634600-59637000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:59634600-59637200	Enhancers	HSMM	muscle
12	chr8:59634800-59636800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:59634800-59637000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:59634800-59637200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:59634800-59637200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr8:59634800-59638000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:59635000-59636800	Weak transcription	Adipose Nuclei	Adipose
18	chr8:59635000-59637000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr8:59635600-59636800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:59635600-59637600	Enhancers	NH-A	brain
21	chr8:59636000-59637000	Flanking Active TSS	HUVEC	blood vessel
22	chr8:59636000-59637600	Enhancers	Primary B cells from cord blood	blood
23	chr8:59636200-59637000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:59636200-59637000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr8:59636200-59637000	Flanking Active TSS	Osteobl	bone
26	chr8:59636400-59637200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:59636400-59637200	Enhancers	GM12878-XiMat	blood
28	chr8:59636400-59637200	Enhancers	NHDF-Ad	bronchial
29	chr8:59636400-59637600	Enhancers	Hela-S3	cervix
30	chr8:59636600-59636800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr8:59636600-59636800	Enhancers	Fetal Thymus	thymus
32	chr8:59636600-59637000	Enhancers	NHLF	lung
33	chr8:59636600-59637200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:59636600-59637200	Enhancers	Sigmoid Colon	Sigmoid Colon

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