Variant report

Variant	rs16924027
Chromosome Location	chr9:100518369-100518370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1512263	0.82[EUR][1000 genomes]
rs16924016	0.82[EUR][1000 genomes]
rs16924040	0.84[JPT][hapmap];0.89[YRI][hapmap];0.93[EUR][1000 genomes]
rs16924042	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16924053	0.93[EUR][1000 genomes]
rs60789150	0.82[EUR][1000 genomes]
rs73484452	0.82[EUR][1000 genomes]
rs73484459	0.82[EUR][1000 genomes]
rs73484460	0.84[EUR][1000 genomes]
rs73484463	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73484465	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73484466	0.84[EUR][1000 genomes]
rs73484469	0.84[EUR][1000 genomes]
rs73484472	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100514200-100521400	Weak transcription	HepG2	liver
2	chr9:100515200-100524200	Weak transcription	Esophagus	oesophagus
3	chr9:100516400-100519400	Weak transcription	Fetal Intestine Large	intestine
4	chr9:100517800-100518400	Bivalent Enhancer	Fetal Stomach	stomach
5	chr9:100518200-100518400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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