Variant report

Variant	rs60789150
Chromosome Location	chr9:100507717-100507718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100498773..100502226-chr9:100506540..100509849,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1512262	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924027	0.82[EUR][1000 genomes]
rs16924040	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16924042	0.98[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16924053	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2805836	0.81[AFR][1000 genomes]
rs57489136	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs59320519	0.98[EUR][1000 genomes]
rs60847735	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73484450	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73484452	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73484459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73484460	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73484463	0.98[EUR][1000 genomes]
rs73484465	0.98[EUR][1000 genomes]
rs73484466	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73484469	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73484472	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100504000-100514000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100505400-100509600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100506600-100507800	Enhancers	Fetal Intestine Large	intestine
4	chr9:100507200-100507800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:100507200-100508000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:100507200-100508000	Enhancers	K562	blood
7	chr9:100507200-100513600	Enhancers	Fetal Intestine Small	intestine
8	chr9:100507600-100507800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr9:100507600-100508200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:100507600-100508400	Enhancers	Esophagus	oesophagus

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