Variant report

Variant	rs73484450
Chromosome Location	chr9:100507445-100507446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1512262	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1512263	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs16924016	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs16924040	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16924042	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16924053	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2805836	0.81[AFR][1000 genomes]
rs57489136	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59320519	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60789150	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs60847735	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73484452	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73484459	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73484460	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73484463	0.95[EUR][1000 genomes]
rs73484465	0.95[EUR][1000 genomes]
rs73484466	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73484469	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73484472	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100504000-100514000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100505400-100509600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100506600-100507800	Enhancers	Fetal Intestine Large	intestine
4	chr9:100507200-100507600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr9:100507200-100507800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:100507200-100508000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:100507200-100508000	Enhancers	K562	blood
8	chr9:100507200-100513600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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