Variant report

Variant	rs16924092
Chromosome Location	chr8:59768554-59768555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59768252..59769801-chr8:59771211..59773823,2	K562	blood:
2	chr8:59766928..59769439-chr8:59769893..59772631,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10090233	0.82[ASN][1000 genomes]
rs11998693	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12678687	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs16924117	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs60888831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
2	chr8:59745600-59770800	Weak transcription	Fetal Kidney	kidney
3	chr8:59745800-59770800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:59746400-59773200	Weak transcription	Fetal Intestine Small	intestine
5	chr8:59747400-59770800	Weak transcription	Pancreas	Pancrea
6	chr8:59750800-59771000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59755600-59770400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:59755800-59772200	Weak transcription	Small Intestine	intestine
9	chr8:59758400-59768600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:59758400-59777400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:59759600-59770200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:59760400-59770800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:59761000-59777200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:59761200-59770800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:59761600-59769000	Strong transcription	Dnd41	blood
16	chr8:59762000-59770800	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:59763000-59771000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:59763000-59771200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:59763200-59771000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:59763400-59770200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:59763400-59771000	Weak transcription	Fetal Intestine Large	intestine
22	chr8:59763800-59769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:59764000-59770000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:59764200-59768600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:59764200-59768800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:59764200-59769800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:59764200-59770200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:59764200-59770400	Weak transcription	Primary T cells from cord blood	blood
29	chr8:59764200-59770800	Weak transcription	Fetal Lung	lung
30	chr8:59764200-59771200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:59764200-59771200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr8:59764200-59771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr8:59764200-59777600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr8:59764400-59769800	Weak transcription	Fetal Stomach	stomach
36	chr8:59764400-59770000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr8:59764400-59770200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:59764400-59770200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:59764400-59770400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr8:59764400-59770400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr8:59764400-59770800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:59764400-59771000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:59764400-59771000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:59764400-59771000	Weak transcription	Esophagus	oesophagus
45	chr8:59764400-59771000	Weak transcription	Gastric	stomach
46	chr8:59764400-59771000	Weak transcription	Thymus	Thymus
47	chr8:59766000-59769000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:59766200-59769600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr8:59766800-59770800	Enhancers	NHDF-Ad	bronchial
50	chr8:59767000-59770400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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