Variant report

Variant	rs16924117
Chromosome Location	chr8:59773256-59773257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59768252..59769801-chr8:59771211..59773823,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10090233	0.82[ASN][1000 genomes]
rs11998693	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12678687	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs16924092	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs16924099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924184	0.87[GIH][hapmap]
rs60888831	1.00[ASN][1000 genomes]
rs73686723	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59758400-59777400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:59761000-59777200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr8:59764200-59777600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:59767000-59773800	Enhancers	HSMM	muscle
6	chr8:59768000-59773600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:59768200-59773800	Enhancers	NH-A	brain
8	chr8:59770400-59774600	Strong transcription	Primary T cells from cord blood	blood
9	chr8:59770600-59773600	Enhancers	Fetal Heart	heart
10	chr8:59771200-59774600	Enhancers	Osteobl	bone
11	chr8:59771200-59777200	Weak transcription	Aorta	Aorta
12	chr8:59771200-59777200	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:59771400-59773400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:59771400-59773600	Weak transcription	Fetal Kidney	kidney
15	chr8:59771400-59774200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:59771400-59774400	Enhancers	NHDF-Ad	bronchial
17	chr8:59771400-59775200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:59771400-59775400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:59771400-59776400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:59771400-59776400	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:59771400-59776800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:59771400-59777000	Weak transcription	Brain Anterior Caudate	brain
23	chr8:59771400-59777200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:59771400-59777200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:59771400-59777200	Weak transcription	Brain Angular Gyrus	brain
26	chr8:59771400-59777200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:59771400-59777200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:59771400-59777200	Weak transcription	Fetal Lung	lung
29	chr8:59771400-59777400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:59771400-59777600	Weak transcription	Gastric	stomach
31	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr8:59771600-59773400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:59771600-59773400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:59771600-59773600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr8:59771600-59773600	Enhancers	Dnd41	blood
36	chr8:59771600-59776000	Weak transcription	Brain Germinal Matrix	brain
37	chr8:59771600-59777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:59771600-59777000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr8:59771600-59794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:59771800-59774200	Strong transcription	Fetal Thymus	thymus
41	chr8:59772000-59773800	Enhancers	K562	blood
42	chr8:59772200-59773600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:59772400-59773400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:59772400-59773800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr8:59772400-59777000	Weak transcription	HUVEC	blood vessel
46	chr8:59772600-59773400	Strong transcription	Thymus	Thymus
47	chr8:59772600-59794400	Weak transcription	Small Intestine	intestine
48	chr8:59772800-59773400	Enhancers	HSMMtube	muscle
49	chr8:59773000-59773600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr8:59773000-59773800	Flanking Active TSS	A549	lung

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