Variant report

Variant	rs16924184
Chromosome Location	chr8:59794434-59794435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59791129..59793196-chr8:59794387..59797068,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16924117	0.87[GIH][hapmap]
rs16924156	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
4	chr8:59777800-59795000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:59782200-59800200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:59787000-59794600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:59788200-59803400	Weak transcription	Gastric	stomach
8	chr8:59789600-59795600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:59789600-59796400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:59789800-59795800	Enhancers	NHDF-Ad	bronchial
11	chr8:59790600-59804000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:59790800-59794600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:59790800-59795400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:59790800-59800400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:59791200-59794600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
18	chr8:59791800-59794600	Weak transcription	HMEC	breast
19	chr8:59792800-59795600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:59792800-59795600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:59793000-59794600	Weak transcription	HSMM	muscle
22	chr8:59793400-59794800	Strong transcription	Fetal Thymus	thymus
23	chr8:59793800-59795000	Enhancers	Primary B cells from peripheral blood	blood
24	chr8:59793800-59795200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr8:59793800-59795400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr8:59794000-59794800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:59794000-59794800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr8:59794000-59794800	Strong transcription	Primary T cells from cord blood	blood
29	chr8:59794000-59795200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:59794000-59795400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:59794000-59795400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr8:59794000-59795400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:59794000-59795600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:59794200-59794800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:59794200-59795200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:59794200-59795600	Enhancers	Osteobl	bone
37	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
38	chr8:59794400-59794800	Enhancers	Brain Substantia Nigra	brain
39	chr8:59794400-59794800	Enhancers	NH-A	brain
40	chr8:59794400-59795000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:59794400-59795000	Enhancers	Colon Smooth Muscle	Colon
42	chr8:59794400-59795000	Enhancers	GM12878-XiMat	blood
43	chr8:59794400-59795000	Enhancers	HSMMtube	muscle
44	chr8:59794400-59795200	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr8:59794400-59795200	Enhancers	HUVEC	blood vessel
46	chr8:59794400-59795400	Enhancers	NHLF	lung
47	chr8:59794400-59795600	Genic enhancers	Dnd41	blood
48	chr8:59794400-59795800	Enhancers	Small Intestine	intestine

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