Variant report

Variant	rs16924804
Chromosome Location	chr11:33802516-33802517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000254508	Chromatin interaction
ENSG00000255272	Chromatin interaction
ENSG00000110429	Chromatin interaction
ENSG00000255161	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1112841	0.89[YRI][hapmap]
rs11601836	0.84[ASN][1000 genomes]
rs12806573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806824	0.89[YRI][hapmap]
rs16924733	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16924812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746602	0.89[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16924804	CD59	cis	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33799800-33802800	Enhancers	Left Ventricle	heart
2	chr11:33801800-33802600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:33801800-33802600	Weak transcription	Aorta	Aorta
4	chr11:33801800-33802800	Enhancers	HSMMtube	muscle
5	chr11:33802200-33802600	Enhancers	Fetal Heart	heart
6	chr11:33802200-33818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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