Variant report

Variant	rs16925028
Chromosome Location	chr9:108651755-108651756
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10114753	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123252	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125600	1.00[ASN][1000 genomes]
rs10978324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57322046	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7021358	1.00[ASN][1000 genomes]
rs73508407	1.00[ASN][1000 genomes]
rs73508412	1.00[ASN][1000 genomes]
rs73508427	1.00[ASN][1000 genomes]
rs73508431	1.00[ASN][1000 genomes]
rs7855286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108645400-108653600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr9:108646200-108651800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:108648200-108652600	Weak transcription	Psoas Muscle	Psoas
4	chr9:108648800-108652400	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:108648800-108652600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:108650200-108652600	Weak transcription	Left Ventricle	heart
7	chr9:108650400-108652200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:108650400-108652600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr9:108650400-108652600	Weak transcription	Fetal Thymus	thymus
10	chr9:108650800-108651800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:108650800-108652200	Weak transcription	Fetal Heart	heart
12	chr9:108650800-108652400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:108651400-108652800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:108651600-108651800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:108651600-108652800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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