Variant report

Variant	rs73508412
Chromosome Location	chr9:108672410-108672411
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10114753	1.00[ASN][1000 genomes]
rs10123252	1.00[ASN][1000 genomes]
rs10125600	1.00[ASN][1000 genomes]
rs10978324	1.00[ASN][1000 genomes]
rs12347810	1.00[ASN][1000 genomes]
rs13440286	1.00[ASN][1000 genomes]
rs16925028	1.00[ASN][1000 genomes]
rs57322046	1.00[ASN][1000 genomes]
rs7021358	1.00[ASN][1000 genomes]
rs73508403	1.00[AMR][1000 genomes]
rs73508407	1.00[ASN][1000 genomes]
rs73508427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73508431	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73508446	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7855286	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108664400-108672600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:108664800-108673600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:108670800-108672600	Weak transcription	A549	lung
4	chr9:108670800-108673600	Weak transcription	NHEK	skin
5	chr9:108670800-108673800	Weak transcription	HMEC	breast
6	chr9:108670800-108674000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:108671400-108672600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:108672200-108672600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:108672200-108674400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:108672200-108675400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:108672400-108673000	Enhancers	Fetal Muscle Leg	muscle
12	chr9:108672400-108673200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:108672400-108674600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:108672400-108674600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:108672400-108674600	Enhancers	Psoas Muscle	Psoas
16	chr9:108672400-108674800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr9:108672400-108675400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:108672400-108675400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:108672400-108676000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links