Variant report

Variant	rs16925360
Chromosome Location	chr11:34282979-34282980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34281972..34284178-chr11:34286435..34290431,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11032580	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11032581	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11032583	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11032595	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11032599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12361605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12364526	1.00[JPT][hapmap]
rs12418981	1.00[ASW][hapmap];0.82[CEU][hapmap];0.82[GIH][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12419001	0.82[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2611107	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2755168	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2755169	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2957489	1.00[CHD][hapmap]
rs4755364	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4755365	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4756111	1.00[CHD][hapmap]
rs4756122	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4756123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756126	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57240681	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs749322	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7933607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34273200-34284400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:34273200-34284600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:34274000-34283400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:34274000-34284600	Weak transcription	NHEK	skin
5	chr11:34274000-34287400	Weak transcription	Primary T cells from cord blood	blood
6	chr11:34274000-34290400	Weak transcription	HSMMtube	muscle
7	chr11:34274200-34287600	Weak transcription	HSMM	muscle
8	chr11:34274200-34288800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:34274600-34283400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:34274600-34283400	Weak transcription	Psoas Muscle	Psoas
11	chr11:34274600-34285000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:34274800-34284400	Weak transcription	Right Ventricle	heart
13	chr11:34275200-34283400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:34275800-34283200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:34276200-34284200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:34278200-34283200	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:34278400-34284000	Weak transcription	Fetal Heart	heart
18	chr11:34279400-34283400	Weak transcription	Left Ventricle	heart
19	chr11:34279600-34283400	Weak transcription	Right Atrium	heart
20	chr11:34280800-34285800	Enhancers	Brain Germinal Matrix	brain
21	chr11:34281000-34283000	Weak transcription	HepG2	liver
22	chr11:34281000-34283400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:34281200-34284400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:34281200-34284400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:34281200-34284600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:34281800-34283600	Enhancers	Brain Substantia Nigra	brain
27	chr11:34281800-34284400	Enhancers	Brain Hippocampus Middle	brain
28	chr11:34282200-34283400	Enhancers	Brain Anterior Caudate	brain
29	chr11:34282400-34283800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:34282400-34284000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:34282400-34287800	Weak transcription	Fetal Brain Female	brain
32	chr11:34282800-34283200	Weak transcription	Brain Angular Gyrus	brain
33	chr11:34282800-34285600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:34282800-34287000	Enhancers	Fetal Lung	lung
35	chr11:34282800-34288000	Enhancers	Brain Cingulate Gyrus	brain
36	chr11:34282800-34291400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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