Variant report

Variant	rs7933607
Chromosome Location	chr11:34285370-34285371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34284799..34287708-chr11:34289917..34291890,2	K562	blood:
2	chr11:34283686..34286562-chr11:34377473..34379594,2	MCF-7	breast:
3	chr11:34283475..34285529-chr11:34358260..34360841,2	MCF-7	breast:
4	chr11:34285128..34287533-chr11:34298437..34301296,2	MCF-7	breast:
5	chr11:34278645..34281276-chr11:34285188..34287550,2	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11032589	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11032599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12361605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12364526	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16925360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2611107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2755164	0.93[ASN][1000 genomes]
rs2755168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2755169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4755364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4755365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756124	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56709002	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs749322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7933213	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34274000-34287400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:34274000-34290400	Weak transcription	HSMMtube	muscle
3	chr11:34274200-34287600	Weak transcription	HSMM	muscle
4	chr11:34274200-34288800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:34280800-34285800	Enhancers	Brain Germinal Matrix	brain
6	chr11:34282400-34287800	Weak transcription	Fetal Brain Female	brain
7	chr11:34282800-34285600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:34282800-34287000	Enhancers	Fetal Lung	lung
9	chr11:34282800-34288000	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:34282800-34291400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:34283000-34288000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:34283000-34288600	Enhancers	HepG2	liver
13	chr11:34283200-34285800	Enhancers	Fetal Muscle Leg	muscle
14	chr11:34283200-34287200	Enhancers	Brain Angular Gyrus	brain
15	chr11:34283200-34289000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:34283200-34290200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:34283400-34286000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:34283400-34286200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:34283400-34286400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:34283400-34286800	Enhancers	Psoas Muscle	Psoas
21	chr11:34283400-34287000	Enhancers	Left Ventricle	heart
22	chr11:34283400-34288000	Enhancers	HMEC	breast
23	chr11:34283400-34289000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:34283400-34289000	Enhancers	Fetal Muscle Trunk	muscle
25	chr11:34283400-34289000	Enhancers	Right Atrium	heart
26	chr11:34283600-34289200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:34283600-34291800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:34283800-34285400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:34283800-34285600	Enhancers	Liver	Liver
30	chr11:34283800-34286400	Enhancers	Hela-S3	cervix
31	chr11:34284000-34285600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr11:34284000-34285600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:34284000-34285600	Enhancers	Fetal Heart	heart
34	chr11:34284000-34286400	Enhancers	Adipose Nuclei	Adipose
35	chr11:34284000-34286800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:34284000-34289000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:34284200-34285400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:34284200-34285600	Enhancers	Stomach Mucosa	stomach
39	chr11:34284200-34285800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr11:34284200-34286000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr11:34284200-34286000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:34284200-34286000	Enhancers	Fetal Stomach	stomach
43	chr11:34284200-34286400	Enhancers	Colon Smooth Muscle	Colon
44	chr11:34284400-34285400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr11:34284400-34285400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:34284400-34285400	Enhancers	Fetal Brain Male	brain
47	chr11:34284400-34285400	Enhancers	Right Ventricle	heart
48	chr11:34284400-34285600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr11:34284400-34285600	Enhancers	Esophagus	oesophagus
50	chr11:34284400-34285800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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