Variant report

Variant	rs16925421
Chromosome Location	chr11:34336619-34336620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34328956..34331154-chr11:34336268..34338352,2	K562	blood:
2	chr11:34336235..34339899-chr11:34377222..34380179,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35915891	1.00[AMR][1000 genomes]
rs73497392	1.00[AMR][1000 genomes]
rs73505471	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16925421	TIE1	trans	lymphoblastoid	seeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34322200-34337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34327200-34340400	Weak transcription	Gastric	stomach
3	chr11:34330600-34338200	Enhancers	Fetal Muscle Leg	muscle
4	chr11:34330600-34340000	Weak transcription	Aorta	Aorta
5	chr11:34330600-34340200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:34330800-34339000	Enhancers	Fetal Heart	heart
7	chr11:34330800-34339600	Weak transcription	Fetal Intestine Small	intestine
8	chr11:34331200-34337800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:34331800-34337600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:34331800-34338600	Enhancers	Right Ventricle	heart
11	chr11:34331800-34340000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:34332000-34337200	Weak transcription	Fetal Brain Female	brain
13	chr11:34332200-34337200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:34332200-34337400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:34332200-34337600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:34332200-34337600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:34332400-34337000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:34332400-34337400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:34332400-34337400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:34332400-34337800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:34332400-34337800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:34332600-34337400	Weak transcription	A549	lung
23	chr11:34332600-34337600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:34332600-34337800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:34332800-34337600	Weak transcription	Brain Angular Gyrus	brain
26	chr11:34332800-34346200	Weak transcription	Lung	lung
27	chr11:34333000-34336800	Weak transcription	HSMMtube	muscle
28	chr11:34333000-34337200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:34333200-34338400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:34333400-34337000	Weak transcription	Fetal Lung	lung
31	chr11:34333600-34337000	Weak transcription	Right Atrium	heart
32	chr11:34333800-34339800	Weak transcription	Small Intestine	intestine
33	chr11:34334000-34339000	Enhancers	Fetal Thymus	thymus
34	chr11:34334800-34337000	Weak transcription	Brain Anterior Caudate	brain
35	chr11:34334800-34339800	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:34335000-34337000	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:34335000-34337000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:34335000-34337600	Weak transcription	Pancreas	Pancrea
39	chr11:34335200-34337200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:34335200-34337600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:34335200-34339800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:34335400-34340000	Weak transcription	Placenta	Placenta
43	chr11:34335600-34336800	Weak transcription	Psoas Muscle	Psoas
44	chr11:34335800-34336800	Weak transcription	Left Ventricle	heart
45	chr11:34335800-34336800	Genic enhancers	HepG2	liver
46	chr11:34335800-34339000	Enhancers	Brain Substantia Nigra	brain
47	chr11:34335800-34341200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:34335800-34342200	Enhancers	Liver	Liver
49	chr11:34336000-34337000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:34336000-34338600	Enhancers	Fetal Stomach	stomach

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