Variant report

Variant	rs16925586
Chromosome Location	chr8:60952499-60952500
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11988688	1.00[EUR][1000 genomes]
rs57683092	1.00[EUR][1000 genomes]
rs59240261	1.00[EUR][1000 genomes]
rs59361057	1.00[EUR][1000 genomes]
rs60478918	1.00[EUR][1000 genomes]
rs60962878	1.00[EUR][1000 genomes]
rs7002451	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60940000-60968400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:60951600-60953200	Enhancers	Colon Smooth Muscle	Colon
3	chr8:60951600-60953400	Enhancers	Fetal Lung	lung
4	chr8:60952000-60953000	Enhancers	HUVEC	blood vessel
5	chr8:60952200-60953000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:60952200-60953000	Enhancers	Rectal Smooth Muscle	rectum
7	chr8:60952200-60954000	Enhancers	HMEC	breast
8	chr8:60952400-60952600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr8:60952400-60952800	Weak transcription	Fetal Kidney	kidney
10	chr8:60952400-60953400	Weak transcription	GM12878-XiMat	blood
11	chr8:60952400-60953600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:60952400-60955400	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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