Variant report

Variant	rs59240261
Chromosome Location	chr8:60885556-60885557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11988688	1.00[EUR][1000 genomes]
rs16925586	1.00[EUR][1000 genomes]
rs56055752	1.00[EUR][1000 genomes]
rs57683092	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59361057	1.00[EUR][1000 genomes]
rs60478918	1.00[EUR][1000 genomes]
rs60962878	1.00[EUR][1000 genomes]
rs73251501	1.00[EUR][1000 genomes]
rs73682834	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60883400-60885600	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:60883600-60885600	Enhancers	Primary B cells from cord blood	blood
3	chr8:60884400-60885600	Enhancers	Colon Smooth Muscle	Colon
4	chr8:60884600-60885600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:60884800-60885600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr8:60885000-60885600	Active TSS	Primary T cells fromperipheralblood	blood
7	chr8:60885000-60885600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr8:60885000-60885600	Enhancers	Dnd41	blood
9	chr8:60885000-60885800	Active TSS	Stomach Smooth Muscle	stomach
10	chr8:60885200-60885600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr8:60885400-60885600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr8:60885400-60885600	Enhancers	Brain Substantia Nigra	brain
13	chr8:60885400-60885600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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