Variant report

Variant	rs16925930
Chromosome Location	chr10:25759528-25759529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16925902	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57764035	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60262159	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124013	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74124014	0.97[AFR][1000 genomes]
rs74124016	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25759000-25759800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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