Variant report

Variant	rs74124013
Chromosome Location	chr10:25767183-25767184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16925902	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16925930	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16926036	0.83[AMR][1000 genomes]
rs16926060	0.83[AMR][1000 genomes]
rs57764035	0.83[AMR][1000 genomes]
rs59851544	0.83[AMR][1000 genomes]
rs60135976	0.83[AMR][1000 genomes]
rs60262159	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74124011	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74124012	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74124014	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74124016	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25765800-25770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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