Variant report

Variant	rs60135976
Chromosome Location	chr10:25810060-25810061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16926036	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56209129	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59851544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124013	0.83[AMR][1000 genomes]
rs74124014	1.00[AMR][1000 genomes]
rs74124016	1.00[AMR][1000 genomes]
rs74124047	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25810000-25810200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr10:25810000-25810200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:25810000-25810600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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