Variant report

Variant	rs16926180
Chromosome Location	chr10:25894685-25894686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1360799	1.00[AMR][1000 genomes]
rs16926087	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16926098	1.00[AMR][1000 genomes]
rs16926121	0.81[YRI][hapmap]
rs16926123	0.83[YRI][hapmap]
rs16926129	0.83[YRI][hapmap]
rs56022543	1.00[AMR][1000 genomes]
rs57198899	1.00[AMR][1000 genomes]
rs58691965	1.00[AMR][1000 genomes]
rs58738507	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61395610	1.00[AMR][1000 genomes]
rs74124066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25894000-25894800	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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