Variant report

Variant	rs16926466
Chromosome Location	chr8:61686062-61686063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61684289..61686170-chr8:61692198..61694163,2	K562	blood:
2	chr8:61652864..61655842-chr8:61684937..61687010,2	MCF-7	breast:
3	chr8:61678725..61681401-chr8:61683493..61686141,2	MCF-7	breast:
4	chr8:61599531..61602030-chr8:61683939..61686653,2	MCF-7	breast:
5	chr8:61676637..61679256-chr8:61683583..61686325,2	K562	blood:
6	chr8:61674992..61676509-chr8:61685123..61687437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16926588	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1797364	chr8:61658362-61696231	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61657000-61690400	Weak transcription	HepG2	liver
2	chr8:61672000-61694400	Weak transcription	A549	lung
3	chr8:61672200-61693400	Weak transcription	Hela-S3	cervix
4	chr8:61672200-61694000	Weak transcription	HUVEC	blood vessel
5	chr8:61675000-61687000	Weak transcription	Fetal Stomach	stomach
6	chr8:61676400-61687000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:61677000-61691800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:61678000-61687600	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:61678400-61687400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr8:61678400-61687600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr8:61678800-61687600	Enhancers	Brain Germinal Matrix	brain
12	chr8:61679000-61686800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr8:61679600-61687200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:61679600-61688200	Enhancers	Fetal Lung	lung
15	chr8:61680000-61698600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:61680200-61686600	Weak transcription	Fetal Brain Male	brain
17	chr8:61680200-61694800	Weak transcription	Lung	lung
18	chr8:61680200-61694800	Weak transcription	K562	blood
19	chr8:61680200-61696200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:61680200-61704200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:61680200-61705200	Weak transcription	Esophagus	oesophagus
22	chr8:61680200-61710400	Weak transcription	Pancreas	Pancrea
23	chr8:61680400-61686800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:61680400-61689400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:61680400-61694600	Weak transcription	Placenta	Placenta
26	chr8:61681000-61694400	Weak transcription	HSMMtube	muscle
27	chr8:61681200-61686600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr8:61681200-61686600	Weak transcription	Left Ventricle	heart
29	chr8:61681200-61693600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:61681200-61693600	Weak transcription	Fetal Muscle Leg	muscle
31	chr8:61681200-61694800	Weak transcription	Gastric	stomach
32	chr8:61681200-61696200	Weak transcription	Right Ventricle	heart
33	chr8:61681200-61698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:61681200-61700400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:61681200-61705200	Weak transcription	Spleen	Spleen
36	chr8:61681400-61693600	Weak transcription	Dnd41	blood
37	chr8:61682200-61705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr8:61682400-61687000	Enhancers	Primary T cells from cord blood	blood
39	chr8:61682400-61687000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr8:61682600-61688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr8:61682600-61690800	Weak transcription	Stomach Mucosa	stomach
42	chr8:61682600-61694800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr8:61682800-61686600	Weak transcription	Fetal Brain Female	brain
44	chr8:61682800-61687200	Enhancers	GM12878-XiMat	blood
45	chr8:61683200-61686600	Weak transcription	Brain Anterior Caudate	brain
46	chr8:61683200-61686600	Weak transcription	Fetal Heart	heart
47	chr8:61683200-61686800	Weak transcription	Brain Angular Gyrus	brain
48	chr8:61683400-61686600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr8:61683400-61694000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr8:61683600-61686600	Weak transcription	Fetal Thymus	thymus

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