Variant report

Variant	rs16926588
Chromosome Location	chr8:61838852-61838853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61837800..61840133-chr8:61855900..61858739,2	MCF-7	breast:
2	chr8:61836839..61839407-chr8:61851968..61854630,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLVS1-1	chr8:61838352-61838934	NONHSAT126853

Variant related genes	Relation type
ENSG00000255397	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16926466	1.00[CEU][hapmap]
rs7845952	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv890947	chr8:61815886-61882751	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61833600-61839200	Enhancers	Primary T cells from cord blood	blood
2	chr8:61834800-61839200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr8:61835200-61839400	Enhancers	Primary B cells from cord blood	blood
4	chr8:61835200-61839400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:61835400-61839400	Enhancers	Thymus	Thymus
6	chr8:61835400-61842600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:61835400-61843000	Enhancers	Primary hematopoietic stem cells	blood
8	chr8:61835600-61839000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:61835800-61839400	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:61835800-61839400	Enhancers	Fetal Thymus	thymus
11	chr8:61835800-61840800	Enhancers	Brain Hippocampus Middle	brain
12	chr8:61836000-61839800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:61836000-61839800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr8:61836200-61839400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:61836200-61839800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:61836400-61839000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr8:61836800-61839000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:61836800-61839800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:61836800-61841800	Weak transcription	Spleen	Spleen
20	chr8:61837000-61840600	Enhancers	Fetal Muscle Leg	muscle
21	chr8:61837000-61842000	Weak transcription	Colonic Mucosa	Colon
22	chr8:61837000-61842200	Weak transcription	Gastric	stomach
23	chr8:61837200-61839200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:61837200-61839200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:61837200-61840000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr8:61837600-61839200	Enhancers	Duodenum Mucosa	Duodenum
27	chr8:61837600-61840600	Enhancers	Brain Substantia Nigra	brain
28	chr8:61838000-61839400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr8:61838000-61839400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:61838000-61840400	Enhancers	Brain Anterior Caudate	brain
31	chr8:61838000-61842400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:61838400-61840000	Enhancers	Placenta	Placenta
33	chr8:61838400-61840800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:61838400-61841000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr8:61838600-61839000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr8:61838600-61839000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr8:61838600-61840000	Enhancers	Fetal Muscle Trunk	muscle
38	chr8:61838600-61840400	Enhancers	Brain Cingulate Gyrus	brain
39	chr8:61838600-61840600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr8:61838600-61840600	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr8:61838600-61840800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr8:61838600-61840800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr8:61838600-61840800	Flanking Active TSS	GM12878-XiMat	blood
44	chr8:61838600-61842600	Enhancers	Dnd41	blood
45	chr8:61838800-61839000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:61838800-61839000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
47	chr8:61838800-61839000	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr8:61838800-61839000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr8:61838800-61839200	Weak transcription	Right Atrium	heart
50	chr8:61838800-61839200	Enhancers	Monocytes-CD14+_RO01746	blood

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