Variant report

Variant	rs16926501
Chromosome Location	chr8:61762753-61762754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16926368	1.00[AMR][1000 genomes]
rs16926384	1.00[AMR][1000 genomes]
rs16926417	1.00[AMR][1000 genomes]
rs16926456	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16926514	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3898502	1.00[AMR][1000 genomes]
rs7004263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:61740400-61780200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:61740600-61765000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:61741200-61763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:61741200-61770600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:61741400-61764600	Weak transcription	Osteobl	bone
7	chr8:61741800-61777600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:61741800-61780800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:61742200-61778800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:61743400-61777400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr8:61744600-61764600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:61747200-61763800	Strong transcription	Primary B cells from cord blood	blood
13	chr8:61747600-61767200	Strong transcription	GM12878-XiMat	blood
14	chr8:61748400-61771800	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:61748600-61767200	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr8:61748600-61770400	Strong transcription	Placenta	Placenta
17	chr8:61749000-61764800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr8:61749200-61766800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:61749400-61770200	Strong transcription	HepG2	liver
20	chr8:61749400-61777600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:61749600-61768000	Weak transcription	Ovary	ovary
22	chr8:61750800-61776200	Strong transcription	Liver	Liver
23	chr8:61751000-61777800	Weak transcription	Aorta	Aorta
24	chr8:61751800-61763000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:61751800-61780400	Strong transcription	Fetal Intestine Large	intestine
26	chr8:61752600-61780400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:61752800-61773800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:61752800-61779000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:61753000-61765200	Weak transcription	Thymus	Thymus
30	chr8:61753000-61770400	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr8:61753000-61779200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:61753200-61779400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr8:61753200-61782000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:61753400-61772400	Strong transcription	Dnd41	blood
35	chr8:61753600-61770400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr8:61753600-61778600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr8:61753800-61763200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr8:61753800-61766200	Strong transcription	Fetal Intestine Small	intestine
39	chr8:61753800-61766800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr8:61753800-61767200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr8:61754000-61767000	Strong transcription	HMEC	breast
42	chr8:61754000-61769800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:61754400-61769600	Strong transcription	K562	blood
44	chr8:61756200-61769200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr8:61757200-61768600	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:61757800-61764600	Weak transcription	Right Ventricle	heart
47	chr8:61758200-61764600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr8:61758600-61763600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr8:61759000-61762800	Weak transcription	Fetal Kidney	kidney
50	chr8:61759400-61763000	Strong transcription	HUVEC	blood vessel

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