Variant report

Variant	rs16926456
Chromosome Location	chr8:61656919-61656920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61655145..61656697-chr8:61656892..61658859,2	K562	blood:
2	chr8:61644817..61647237-chr8:61656658..61659132,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10098584	1.00[ASN][1000 genomes]
rs10101023	1.00[ASN][1000 genomes]
rs13261519	1.00[ASN][1000 genomes]
rs13269361	1.00[ASN][1000 genomes]
rs13438807	1.00[ASN][1000 genomes]
rs16926368	1.00[AMR][1000 genomes]
rs16926379	1.00[ASN][1000 genomes]
rs16926384	1.00[AMR][1000 genomes]
rs16926398	1.00[ASN][1000 genomes]
rs16926417	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926440	1.00[ASN][1000 genomes]
rs16926444	1.00[ASN][1000 genomes]
rs16926501	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16926514	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16926528	1.00[ASN][1000 genomes]
rs28539174	1.00[ASN][1000 genomes]
rs28539276	1.00[ASN][1000 genomes]
rs28667506	1.00[ASN][1000 genomes]
rs34833917	1.00[ASN][1000 genomes]
rs35777815	1.00[ASN][1000 genomes]
rs3898502	1.00[AMR][1000 genomes]
rs41272433	1.00[AMR][1000 genomes]
rs41272442	1.00[ASN][1000 genomes]
rs62524942	1.00[ASN][1000 genomes]
rs62524943	1.00[ASN][1000 genomes]
rs62524944	1.00[ASN][1000 genomes]
rs62524946	1.00[ASN][1000 genomes]
rs62524950	1.00[ASN][1000 genomes]
rs62524951	1.00[ASN][1000 genomes]
rs62524954	1.00[ASN][1000 genomes]
rs62524956	1.00[ASN][1000 genomes]
rs62524957	1.00[ASN][1000 genomes]
rs62526484	1.00[ASN][1000 genomes]
rs62526485	1.00[ASN][1000 genomes]
rs62526486	1.00[ASN][1000 genomes]
rs62526528	1.00[ASN][1000 genomes]
rs6471895	1.00[ASN][1000 genomes]
rs7004263	1.00[AMR][1000 genomes]
rs7013969	1.00[ASN][1000 genomes]
rs730084	1.00[ASN][1000 genomes]
rs7814111	1.00[AMR][1000 genomes]
rs7827147	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61638600-61664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:61644200-61659200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:61644800-61659400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:61648800-61663800	Weak transcription	HUVEC	blood vessel
5	chr8:61649000-61663800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:61649200-61660800	Weak transcription	Small Intestine	intestine
7	chr8:61651600-61657000	Enhancers	Brain Substantia Nigra	brain
8	chr8:61651600-61664600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:61652000-61663600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:61653200-61663400	Weak transcription	Fetal Brain Female	brain
11	chr8:61653800-61657000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:61653800-61657400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr8:61653800-61658600	Strong transcription	Primary B cells from cord blood	blood
14	chr8:61654000-61658200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:61655000-61660200	Weak transcription	K562	blood
16	chr8:61655000-61664800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:61655000-61665400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:61655200-61657200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:61655400-61657000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:61655400-61657000	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr8:61655400-61657000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:61655400-61658400	Enhancers	Brain Hippocampus Middle	brain
23	chr8:61655400-61659400	Weak transcription	NH-A	brain
24	chr8:61655400-61660200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:61655600-61657000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
26	chr8:61655600-61657000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr8:61655600-61657000	Weak transcription	Placenta	Placenta
28	chr8:61655600-61657400	Weak transcription	Colonic Mucosa	Colon
29	chr8:61655600-61657800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:61655600-61660200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr8:61655600-61663400	Weak transcription	Dnd41	blood
32	chr8:61655600-61663800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:61655600-61663800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:61655600-61664000	Weak transcription	HSMMtube	muscle
35	chr8:61655600-61664200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:61655600-61664200	Weak transcription	Spleen	Spleen
37	chr8:61655600-61671400	Weak transcription	Hela-S3	cervix
38	chr8:61655800-61657000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:61655800-61657000	Enhancers	Brain Germinal Matrix	brain
40	chr8:61655800-61657000	Enhancers	HepG2	liver
41	chr8:61655800-61657600	Weak transcription	Fetal Intestine Large	intestine
42	chr8:61655800-61660200	Weak transcription	Fetal Thymus	thymus
43	chr8:61655800-61660600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr8:61655800-61664000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:61655800-61664000	Weak transcription	Fetal Kidney	kidney
46	chr8:61655800-61664400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr8:61655800-61666200	Weak transcription	Lung	lung
48	chr8:61656000-61657000	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr8:61656000-61657000	Enhancers	Brain Cingulate Gyrus	brain
50	chr8:61656000-61658400	Weak transcription	Esophagus	oesophagus

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