Variant report

Variant	rs10101023
Chromosome Location	chr8:61692247-61692248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61684289..61686170-chr8:61692198..61694163,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10090769	1.00[ASW][hapmap]
rs10098584	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100774	1.00[EUR][1000 genomes]
rs10107158	1.00[EUR][1000 genomes]
rs10111716	0.81[AFR][1000 genomes]
rs13261519	1.00[ASN][1000 genomes]
rs13269361	1.00[ASN][1000 genomes]
rs13438807	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926379	1.00[ASN][1000 genomes]
rs16926398	1.00[ASN][1000 genomes]
rs16926440	1.00[ASN][1000 genomes]
rs16926444	1.00[ASN][1000 genomes]
rs16926456	1.00[ASN][1000 genomes]
rs16926528	1.00[ASN][1000 genomes]
rs28534585	0.86[EUR][1000 genomes]
rs28539174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539276	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667506	1.00[ASN][1000 genomes]
rs34833917	1.00[ASN][1000 genomes]
rs35777815	1.00[ASN][1000 genomes]
rs41272442	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41312172	1.00[EUR][1000 genomes]
rs45461501	1.00[EUR][1000 genomes]
rs60899058	1.00[EUR][1000 genomes]
rs62524942	1.00[ASN][1000 genomes]
rs62524943	1.00[ASN][1000 genomes]
rs62524944	1.00[ASN][1000 genomes]
rs62524946	1.00[ASN][1000 genomes]
rs62524950	1.00[ASN][1000 genomes]
rs62524951	1.00[ASN][1000 genomes]
rs62524954	1.00[ASN][1000 genomes]
rs62524956	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524957	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526484	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526485	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526486	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526528	1.00[ASN][1000 genomes]
rs6471895	1.00[ASN][1000 genomes]
rs7013969	1.00[ASN][1000 genomes]
rs730084	1.00[ASN][1000 genomes]
rs73254571	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1797364	chr8:61658362-61696231	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3337994	chr8:61687698-61692296	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61672000-61694400	Weak transcription	A549	lung
2	chr8:61672200-61693400	Weak transcription	Hela-S3	cervix
3	chr8:61672200-61694000	Weak transcription	HUVEC	blood vessel
4	chr8:61680000-61698600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:61680200-61694800	Weak transcription	Lung	lung
6	chr8:61680200-61694800	Weak transcription	K562	blood
7	chr8:61680200-61696200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:61680200-61704200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:61680200-61705200	Weak transcription	Esophagus	oesophagus
10	chr8:61680200-61710400	Weak transcription	Pancreas	Pancrea
11	chr8:61680400-61694600	Weak transcription	Placenta	Placenta
12	chr8:61681000-61694400	Weak transcription	HSMMtube	muscle
13	chr8:61681200-61693600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:61681200-61693600	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:61681200-61694800	Weak transcription	Gastric	stomach
16	chr8:61681200-61696200	Weak transcription	Right Ventricle	heart
17	chr8:61681200-61698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:61681200-61700400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:61681200-61705200	Weak transcription	Spleen	Spleen
20	chr8:61681400-61693600	Weak transcription	Dnd41	blood
21	chr8:61682200-61705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:61682600-61694800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:61683400-61694000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:61683600-61711200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:61683800-61692800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr8:61683800-61693800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr8:61683800-61695800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr8:61685200-61704200	Weak transcription	Small Intestine	intestine
29	chr8:61686000-61692600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:61686000-61698600	Weak transcription	Fetal Intestine Small	intestine
31	chr8:61686200-61693600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:61686200-61693600	Weak transcription	HSMM	muscle
33	chr8:61686200-61694400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:61686200-61694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr8:61686200-61694800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:61686800-61693600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:61686800-61694800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:61687000-61693600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:61687000-61694800	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:61687200-61693600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr8:61687200-61694000	Weak transcription	Fetal Thymus	thymus
42	chr8:61687200-61704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:61687200-61704200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr8:61687200-61720400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:61687400-61692800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:61687400-61694600	Weak transcription	Fetal Stomach	stomach
47	chr8:61687400-61694800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:61687400-61704400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr8:61688800-61693200	Enhancers	Primary T cells from cord blood	blood
50	chr8:61688800-61693400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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