Variant report

Variant	rs13269361
Chromosome Location	chr8:61607451-61607452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61601737..61603348-chr8:61606675..61608350,2	MCF-7	breast:
2	chr8:61605995..61607571-chr8:61609134..61612024,2	MCF-7	breast:
3	chr8:61564774..61566716-chr8:61606613..61609248,2	MCF-7	breast:
4	chr8:61595542..61601111-chr8:61606456..61610511,8	K562	blood:
5	chr8:61590547..61593297-chr8:61607284..61609575,2	MCF-7	breast:
6	chr8:61596105..61598331-chr8:61606151..61608898,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction
ENSG00000254869	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10098584	1.00[ASN][1000 genomes]
rs10101023	1.00[ASN][1000 genomes]
rs13261519	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13275837	0.88[AMR][1000 genomes]
rs13438807	1.00[ASN][1000 genomes]
rs16926379	1.00[MEX][hapmap];0.86[MKK][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926398	0.86[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926440	1.00[ASN][1000 genomes]
rs16926444	1.00[ASN][1000 genomes]
rs16926456	1.00[ASN][1000 genomes]
rs16926528	1.00[ASN][1000 genomes]
rs28539174	1.00[ASN][1000 genomes]
rs28539276	1.00[ASN][1000 genomes]
rs28667506	1.00[ASN][1000 genomes]
rs34301717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34833917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35777815	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272442	1.00[ASN][1000 genomes]
rs62524942	1.00[ASN][1000 genomes]
rs62524943	1.00[ASN][1000 genomes]
rs62524944	1.00[ASN][1000 genomes]
rs62524946	1.00[ASN][1000 genomes]
rs62524950	1.00[ASN][1000 genomes]
rs62524951	1.00[ASN][1000 genomes]
rs62524954	1.00[ASN][1000 genomes]
rs62524956	1.00[ASN][1000 genomes]
rs62524957	1.00[ASN][1000 genomes]
rs62526484	1.00[ASN][1000 genomes]
rs62526485	1.00[ASN][1000 genomes]
rs62526486	1.00[ASN][1000 genomes]
rs62526528	1.00[ASN][1000 genomes]
rs6471895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988200	0.82[ASW][hapmap]
rs7013969	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv824657	chr8:61555227-61626758	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv824658	chr8:61561488-61612108	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1027929	chr8:61569620-61617812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1017564	chr8:61577791-61617812	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
8	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv1019809	chr8:61597918-61624034	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv539631	chr8:61597918-61624034	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv6219	chr8:61599770-61644558	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61594000-61610400	Weak transcription	A549	lung
2	chr8:61594200-61617600	Weak transcription	Hela-S3	cervix
3	chr8:61597000-61619800	Weak transcription	HMEC	breast
4	chr8:61598000-61609000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:61598000-61609600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:61598200-61619800	Weak transcription	HepG2	liver
7	chr8:61598800-61608000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:61599200-61613200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:61600200-61612200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:61602600-61610800	Weak transcription	Fetal Intestine Small	intestine
11	chr8:61603400-61610200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:61603400-61613400	Weak transcription	K562	blood
13	chr8:61603400-61616200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr8:61603400-61620600	Weak transcription	Fetal Intestine Large	intestine
15	chr8:61603400-61626200	Weak transcription	Fetal Thymus	thymus
16	chr8:61603800-61607600	Enhancers	Primary T cells from cord blood	blood
17	chr8:61603800-61608200	Enhancers	Brain Germinal Matrix	brain
18	chr8:61604400-61614200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:61604600-61609000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:61605200-61607600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:61605200-61607600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr8:61605200-61607600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr8:61605200-61607600	Enhancers	Psoas Muscle	Psoas
24	chr8:61605200-61607800	Enhancers	Primary B cells from peripheral blood	blood
25	chr8:61605200-61607800	Enhancers	Left Ventricle	heart
26	chr8:61605200-61608200	Enhancers	Brain Substantia Nigra	brain
27	chr8:61605200-61608600	Enhancers	Brain Anterior Caudate	brain
28	chr8:61605400-61607600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr8:61605400-61607600	Enhancers	Right Ventricle	heart
30	chr8:61605600-61607600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr8:61605600-61607600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr8:61605600-61607600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr8:61605600-61607600	Enhancers	GM12878-XiMat	blood
34	chr8:61605600-61607800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:61605600-61607800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr8:61605600-61608200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr8:61605800-61607600	Enhancers	Fetal Muscle Leg	muscle
38	chr8:61605800-61615400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:61606000-61608200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr8:61606000-61608600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:61606000-61611400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr8:61606200-61607600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr8:61606200-61609200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:61606200-61612000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr8:61606400-61607600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr8:61606400-61607800	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr8:61606400-61608400	Enhancers	Fetal Heart	heart
48	chr8:61606400-61620400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr8:61606600-61608200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:61606600-61610200	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links