Variant report

Variant	rs28539276
Chromosome Location	chr8:61736783-61736784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61735291..61738115-chr8:61764523..61766656,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10098584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100774	1.00[EUR][1000 genomes]
rs10101023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107158	1.00[EUR][1000 genomes]
rs13261519	1.00[ASN][1000 genomes]
rs13269361	1.00[ASN][1000 genomes]
rs13438807	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926379	1.00[ASN][1000 genomes]
rs16926398	1.00[ASN][1000 genomes]
rs16926440	1.00[ASN][1000 genomes]
rs16926444	1.00[ASN][1000 genomes]
rs16926456	1.00[ASN][1000 genomes]
rs16926528	1.00[ASN][1000 genomes]
rs28534585	0.86[EUR][1000 genomes]
rs28539174	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667506	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34833917	1.00[ASN][1000 genomes]
rs35777815	1.00[ASN][1000 genomes]
rs41272442	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41312172	1.00[EUR][1000 genomes]
rs45461501	1.00[EUR][1000 genomes]
rs60899058	1.00[EUR][1000 genomes]
rs62524942	1.00[ASN][1000 genomes]
rs62524943	1.00[ASN][1000 genomes]
rs62524944	1.00[ASN][1000 genomes]
rs62524946	1.00[ASN][1000 genomes]
rs62524950	1.00[ASN][1000 genomes]
rs62524951	1.00[ASN][1000 genomes]
rs62524954	1.00[ASN][1000 genomes]
rs62524956	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524957	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526484	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526485	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526486	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526528	1.00[ASN][1000 genomes]
rs6471895	1.00[ASN][1000 genomes]
rs7013969	1.00[ASN][1000 genomes]
rs730084	1.00[ASN][1000 genomes]
rs73254571	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1019330	chr8:61697104-61744335	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61691200-61742800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:61695000-61743000	Weak transcription	Placenta	Placenta
3	chr8:61704400-61745000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:61705600-61742400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:61705600-61742600	Weak transcription	Spleen	Spleen
6	chr8:61705600-61743000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:61705600-61743000	Weak transcription	Fetal Stomach	stomach
8	chr8:61705600-61743000	Weak transcription	Lung	lung
9	chr8:61705800-61742400	Weak transcription	Gastric	stomach
10	chr8:61705800-61755000	Weak transcription	Psoas Muscle	Psoas
11	chr8:61708800-61739000	Weak transcription	A549	lung
12	chr8:61711000-61742400	Weak transcription	Pancreas	Pancrea
13	chr8:61711800-61743800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:61718200-61740400	Weak transcription	Brain Angular Gyrus	brain
15	chr8:61718200-61749400	Weak transcription	Fetal Kidney	kidney
16	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:61720400-61742400	Weak transcription	NH-A	brain
18	chr8:61720600-61742400	Weak transcription	Fetal Brain Female	brain
19	chr8:61720800-61752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:61722000-61742800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:61723400-61741400	Weak transcription	NHEK	skin
22	chr8:61723600-61739000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:61723800-61738600	Weak transcription	Fetal Intestine Small	intestine
24	chr8:61723800-61740200	Weak transcription	Brain Anterior Caudate	brain
25	chr8:61724000-61737400	Weak transcription	Brain Germinal Matrix	brain
26	chr8:61724200-61738600	Weak transcription	Esophagus	oesophagus
27	chr8:61724400-61740200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:61726200-61736800	Weak transcription	Fetal Lung	lung
29	chr8:61726800-61749600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:61728200-61749000	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:61728400-61737000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr8:61728600-61740000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:61728800-61741000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr8:61728800-61749400	Weak transcription	Small Intestine	intestine
35	chr8:61729000-61740800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr8:61729200-61737600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:61729200-61742200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:61729200-61751600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:61729600-61742400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr8:61729800-61737200	Weak transcription	Fetal Heart	heart
41	chr8:61729800-61743000	Weak transcription	K562	blood
42	chr8:61730200-61737800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:61730200-61738200	Weak transcription	HepG2	liver
44	chr8:61730200-61740200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr8:61730200-61740200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr8:61730200-61741600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:61730200-61743000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr8:61730800-61737200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr8:61730800-61738600	Weak transcription	HSMMtube	muscle
50	chr8:61730800-61742400	Weak transcription	Colonic Mucosa	Colon

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