Variant report

Variant	rs60899058
Chromosome Location	chr8:61776653-61776654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61563915..61566181-chr8:61776392..61779664,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254869	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10098584	1.00[EUR][1000 genomes]
rs10100774	1.00[EUR][1000 genomes]
rs10101023	1.00[EUR][1000 genomes]
rs10107158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438807	1.00[EUR][1000 genomes]
rs28534585	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539174	1.00[EUR][1000 genomes]
rs28539276	1.00[EUR][1000 genomes]
rs41272442	1.00[EUR][1000 genomes]
rs41312172	1.00[EUR][1000 genomes]
rs45461501	1.00[EUR][1000 genomes]
rs62524956	0.86[EUR][1000 genomes]
rs62524957	0.86[EUR][1000 genomes]
rs62525260	1.00[ASN][1000 genomes]
rs62526484	0.86[EUR][1000 genomes]
rs62526485	0.86[EUR][1000 genomes]
rs62526486	0.86[EUR][1000 genomes]
rs73254571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:61740400-61780200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:61741800-61777600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:61741800-61780800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:61742200-61778800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:61743400-61777400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:61749400-61777600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:61751000-61777800	Weak transcription	Aorta	Aorta
9	chr8:61751800-61780400	Strong transcription	Fetal Intestine Large	intestine
10	chr8:61752600-61780400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:61752800-61779000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:61753000-61779200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:61753200-61779400	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:61753200-61782000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:61753600-61778600	Strong transcription	Duodenum Mucosa	Duodenum
16	chr8:61760400-61780000	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr8:61760400-61780400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:61761000-61777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:61761000-61778600	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:61761000-61780600	Strong transcription	Primary B cells from peripheral blood	blood
21	chr8:61762400-61779400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:61764400-61780400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:61765000-61780600	Weak transcription	Stomach Mucosa	stomach
24	chr8:61765000-61780800	Strong transcription	Primary B cells from cord blood	blood
25	chr8:61765200-61778800	Strong transcription	Fetal Lung	lung
26	chr8:61765800-61777200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr8:61766200-61777600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr8:61766800-61776800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr8:61767000-61777000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:61767000-61777400	Strong transcription	HSMM	muscle
31	chr8:61767200-61777200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:61768000-61778800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:61769400-61776800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr8:61769600-61777400	Weak transcription	Gastric	stomach
35	chr8:61769600-61777400	Weak transcription	Spleen	Spleen
36	chr8:61769600-61778200	Weak transcription	Fetal Brain Male	brain
37	chr8:61769600-61778200	Weak transcription	Right Ventricle	heart
38	chr8:61769600-61783000	Weak transcription	Small Intestine	intestine
39	chr8:61769600-61784000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr8:61769600-61785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr8:61769800-61777200	Weak transcription	Brain Angular Gyrus	brain
42	chr8:61769800-61777200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr8:61769800-61788400	Weak transcription	Fetal Brain Female	brain
44	chr8:61770200-61776800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:61770400-61776800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:61770400-61777200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr8:61770600-61777600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr8:61771400-61779800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:61771800-61778600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:61772000-61780000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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