Variant report

Variant	rs10107158
Chromosome Location	chr8:61794037-61794038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10098584	1.00[EUR][1000 genomes]
rs10100774	1.00[EUR][1000 genomes]
rs10101023	1.00[EUR][1000 genomes]
rs13261976	0.86[AFR][1000 genomes]
rs13438807	1.00[EUR][1000 genomes]
rs28534585	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539174	1.00[EUR][1000 genomes]
rs28539276	1.00[EUR][1000 genomes]
rs41272442	1.00[EUR][1000 genomes]
rs41312172	1.00[EUR][1000 genomes]
rs45461501	1.00[EUR][1000 genomes]
rs60899058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524956	0.86[EUR][1000 genomes]
rs62524957	0.86[EUR][1000 genomes]
rs62525260	1.00[ASN][1000 genomes]
rs62526484	0.86[EUR][1000 genomes]
rs62526485	0.86[EUR][1000 genomes]
rs62526486	0.86[EUR][1000 genomes]
rs730084	1.00[CEU][hapmap]
rs73254571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61788400-61797400	Weak transcription	Primary T cells from cord blood	blood
2	chr8:61789800-61804600	Weak transcription	Pancreas	Pancrea
3	chr8:61792000-61794200	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:61793000-61797600	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links