Variant report

Variant	rs16927875
Chromosome Location	chr8:62686225-62686226
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:62685623..62687487-chr8:62695175..62698146,2	MCF-7	breast:
2	chr8:62684522..62687347-chr8:62687879..62690833,2	MCF-7	breast:
3	chr8:62681611..62684475-chr8:62685086..62689065,3	K562	blood:
4	chr8:62624647..62627193-chr8:62685196..62687720,3	K562	blood:
5	chr8:62686035..62688553-chr8:62697509..62700422,2	MCF-7	breast:
6	chr8:62681389..62684437-chr8:62686208..62689276,4	K562	blood:
7	chr8:62685719..62688066-chr8:62690327..62692016,3	K562	blood:
8	chr8:62680744..62684386-chr8:62685245..62688258,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254119	Chromatin interaction
ENSG00000198363	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10504336	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12156078	1.00[CEU][hapmap]
rs12156424	1.00[CEU][hapmap]
rs1495006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927866	1.00[CEU][hapmap]
rs16927883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927904	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16927910	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17542259	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3195249	1.00[CEU][hapmap]
rs55839820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901448	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57092565	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57717707	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660915	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62684800-62686400	Enhancers	Hela-S3	cervix
2	chr8:62685200-62686400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:62685400-62686400	Enhancers	Aorta	Aorta
4	chr8:62685400-62686400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:62685400-62686400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr8:62685400-62686600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:62685400-62686600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr8:62685400-62686800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:62685400-62686800	Flanking Active TSS	A549	lung
10	chr8:62685400-62687000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:62685600-62686600	Flanking Active TSS	NHDF-Ad	bronchial
12	chr8:62685600-62696200	Weak transcription	Pancreas	Pancrea
13	chr8:62685800-62686400	Enhancers	K562	blood
14	chr8:62685800-62686800	Enhancers	Fetal Lung	lung
15	chr8:62686000-62686400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:62686000-62686400	Active TSS	Brain Anterior Caudate	brain
17	chr8:62686000-62686400	Active TSS	Right Atrium	heart
18	chr8:62686000-62686600	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr8:62686000-62686600	Flanking Active TSS	Osteobl	bone
20	chr8:62686000-62686800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:62686200-62686800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:62686200-62687800	Weak transcription	Lung	lung

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