Variant report

Variant	rs72660915
Chromosome Location	chr8:62685520-62685521
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62684522..62687347-chr8:62687879..62690833,2	MCF-7	breast:
2	chr8:62672838..62674719-chr8:62683973..62685855,2	K562	blood:
3	chr8:62681611..62684475-chr8:62685086..62689065,3	K562	blood:
4	chr8:62624647..62627193-chr8:62685196..62687720,3	K562	blood:
5	chr8:62680744..62684386-chr8:62685245..62688258,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198363	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10504336	0.95[AFR][1000 genomes]
rs1495006	1.00[AFR][1000 genomes]
rs16927875	1.00[AFR][1000 genomes]
rs16927904	1.00[AFR][1000 genomes]
rs2015490	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62679600-62685800	Weak transcription	Fetal Lung	lung
2	chr8:62684000-62685800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:62684200-62686000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:62684600-62685600	Enhancers	NHDF-Ad	bronchial
5	chr8:62684800-62686400	Enhancers	Hela-S3	cervix
6	chr8:62685200-62685600	Enhancers	Esophagus	oesophagus
7	chr8:62685200-62685600	Enhancers	Pancreas	Pancrea
8	chr8:62685200-62685800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr8:62685200-62686000	Enhancers	Adipose Nuclei	Adipose
10	chr8:62685200-62686000	Enhancers	Osteobl	bone
11	chr8:62685200-62686200	Enhancers	Lung	lung
12	chr8:62685200-62686400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:62685400-62685800	Enhancers	Right Atrium	heart
14	chr8:62685400-62686000	Enhancers	HSMMtube	muscle
15	chr8:62685400-62686200	Enhancers	HepG2	liver
16	chr8:62685400-62686400	Enhancers	Aorta	Aorta
17	chr8:62685400-62686400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr8:62685400-62686400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr8:62685400-62686600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:62685400-62686600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr8:62685400-62686800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:62685400-62686800	Flanking Active TSS	A549	lung
23	chr8:62685400-62687000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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