Variant report

Variant	rs16928138
Chromosome Location	chr9:8568049-8568050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10511502	1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10511503	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10977200	0.81[ASN][1000 genomes]
rs10977201	0.81[ASN][1000 genomes]
rs10977202	0.81[ASN][1000 genomes]
rs10977203	0.81[ASN][1000 genomes]
rs12001671	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16928132	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16928134	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16928137	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16928240	1.00[EUR][1000 genomes]
rs56869162	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57803188	0.83[ASN][1000 genomes]
rs58014192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59259113	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60798128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7026937	0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7028141	0.81[ASN][1000 genomes]
rs7032177	0.81[ASN][1000 genomes]
rs7038093	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs73421081	1.00[EUR][1000 genomes]
rs73421084	0.87[ASN][1000 genomes]
rs73423204	0.85[ASN][1000 genomes]
rs73423208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7846893	0.88[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv982611	chr9:8562021-8568194	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8553600-8571000	Weak transcription	Brain Anterior Caudate	brain
2	chr9:8556200-8571200	Weak transcription	Ovary	ovary
3	chr9:8556400-8568200	Weak transcription	Brain Substantia Nigra	brain
4	chr9:8556600-8570600	Weak transcription	Fetal Lung	lung
5	chr9:8557400-8575200	Weak transcription	Fetal Kidney	kidney
6	chr9:8558600-8571000	Weak transcription	Pancreas	Pancrea
7	chr9:8561200-8570600	Weak transcription	Fetal Heart	heart
8	chr9:8561600-8571800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:8563000-8568600	Weak transcription	Fetal Brain Male	brain
10	chr9:8565800-8568800	Weak transcription	Dnd41	blood
11	chr9:8566400-8569000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:8566400-8569000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:8567200-8568800	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:8567600-8569400	Weak transcription	Brain Inferior Temporal Lobe	brain

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