Variant report

Variant	rs7038093
Chromosome Location	chr9:8556180-8556181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10511502	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10511503	0.85[JPT][hapmap]
rs10977136	1.00[TSI][hapmap]
rs10977138	1.00[TSI][hapmap]
rs10977200	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10977201	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10977202	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10977203	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10977266	1.00[CEU][hapmap]
rs12001671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12347603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928132	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs16928137	1.00[JPT][hapmap]
rs16928138	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4625085	1.00[CEU][hapmap]
rs56869162	0.95[ASN][1000 genomes]
rs57803188	0.93[ASN][1000 genomes]
rs59259113	0.95[ASN][1000 genomes]
rs7026937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7028030	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7028141	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7030442	0.95[ASN][1000 genomes]
rs7032177	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7846893	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870438	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv973831	chr9:8554250-8557126	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
2	chr9:8534600-8564000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:8541600-8557600	Weak transcription	Fetal Stomach	stomach
4	chr9:8546000-8557000	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:8553000-8561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:8553600-8571000	Weak transcription	Brain Anterior Caudate	brain
7	chr9:8553800-8559400	Weak transcription	Brain Angular Gyrus	brain
8	chr9:8554400-8557200	Enhancers	Liver	Liver
9	chr9:8555200-8556200	Enhancers	Brain Hippocampus Middle	brain
10	chr9:8555200-8556400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:8555400-8556200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:8555400-8556200	Enhancers	Brain Cingulate Gyrus	brain
13	chr9:8555400-8557000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:8555600-8556200	Enhancers	Ovary	ovary
15	chr9:8555600-8556400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr9:8555600-8556600	Enhancers	Adipose Nuclei	Adipose
17	chr9:8555600-8557000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:8555600-8557400	Enhancers	Fetal Kidney	kidney
19	chr9:8555800-8556200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr9:8555800-8556400	Enhancers	Brain Substantia Nigra	brain
21	chr9:8555800-8556600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:8555800-8556600	Enhancers	Fetal Lung	lung
23	chr9:8555800-8557400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:8556000-8556200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:8556000-8560600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:8556000-8561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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