Variant report

Variant	rs16928142
Chromosome Location	chr11:35977163-35977164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35973453..35975346-chr11:35976074..35977651,2	K562	blood:
2	chr11:35970073..35972364-chr11:35975680..35977244,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1961758	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16928142	C11orf41	cis	parietal	SCAN
rs16928142	PHTF2	trans	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35967000-35982400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:35967200-35980200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:35967200-35980400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:35968000-35983400	Weak transcription	Fetal Stomach	stomach
5	chr11:35968600-35994200	Weak transcription	Hela-S3	cervix
6	chr11:35969600-35982600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:35971200-35982600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:35971400-35982600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:35971400-35986800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:35971600-35977400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:35971600-35982400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:35971600-35984400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:35972200-35995400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:35972200-35996000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:35974800-35999600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:35975000-35982800	Weak transcription	Psoas Muscle	Psoas
17	chr11:35975000-35985800	Weak transcription	Ovary	ovary
18	chr11:35975000-35995800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:35975200-35979400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:35975600-35985600	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:35976000-35981600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:35976200-35982400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:35976200-35984400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:35976200-35995800	Weak transcription	HSMM	muscle
25	chr11:35976400-35978200	Enhancers	HUVEC	blood vessel
26	chr11:35976400-35980000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:35976400-36000600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:35976800-35978200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:35976800-35980400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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