Variant report

Variant	rs1961758
Chromosome Location	chr11:36124199-36124200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36122645..36124881-chr11:36125439..36127974,2	MCF-7	breast:
2	chr11:36106010..36110247-chr11:36124159..36128130,5	K562	blood:
3	chr11:36115823..36119205-chr11:36120759..36124604,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12277126	1.00[YRI][hapmap]
rs12288514	1.00[YRI][hapmap]
rs16928142	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1961758	CAMK1	trans	lymphoblastoid	seeQTL

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36100600-36139600	Weak transcription	HMEC	breast
2	chr11:36112800-36126200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:36112800-36126200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:36113600-36125800	Weak transcription	HUVEC	blood vessel
5	chr11:36113600-36134200	Weak transcription	Fetal Kidney	kidney
6	chr11:36114400-36130200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:36115000-36126200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:36115400-36125200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:36115800-36124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:36115800-36126000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:36115800-36145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:36116000-36126200	Weak transcription	NH-A	brain
13	chr11:36116200-36126200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:36116600-36125600	Weak transcription	Fetal Stomach	stomach
15	chr11:36116600-36127000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:36117000-36126200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:36118000-36125600	Weak transcription	Pancreas	Pancrea
18	chr11:36118800-36124600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:36118800-36134400	Weak transcription	A549	lung
20	chr11:36119200-36144400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:36120000-36124400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:36120000-36124600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:36120000-36128200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:36120200-36124400	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr11:36120200-36125000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:36120200-36125600	Weak transcription	Ovary	ovary
27	chr11:36120200-36126200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:36120200-36128400	Weak transcription	Psoas Muscle	Psoas
29	chr11:36120200-36145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:36120400-36126000	Weak transcription	Fetal Lung	lung
31	chr11:36120400-36126200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:36120400-36129600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:36120600-36125200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:36120600-36125400	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:36120600-36126400	Weak transcription	Fetal Brain Female	brain
36	chr11:36120800-36124400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:36120800-36125400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:36120800-36125600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:36120800-36126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr11:36120800-36129600	Strong transcription	Fetal Muscle Leg	muscle
41	chr11:36121200-36126000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:36121200-36126600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:36121400-36124400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:36121400-36125400	Weak transcription	Fetal Heart	heart
45	chr11:36121400-36126200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:36121400-36126400	Weak transcription	Fetal Brain Male	brain
47	chr11:36121600-36126200	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:36121600-36126400	Weak transcription	Brain Anterior Caudate	brain
49	chr11:36121800-36125400	Weak transcription	Brain Germinal Matrix	brain
50	chr11:36121800-36125800	Weak transcription	Brain Substantia Nigra	brain

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