Variant report

Variant	rs16928282
Chromosome Location	chr9:8697215-8697216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10125358	0.85[EUR][1000 genomes]
rs10977250	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12685924	0.90[EUR][1000 genomes]
rs1368981	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs1368982	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs1415724	0.93[CEU][hapmap]
rs1434264	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes]
rs1434265	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs1512380	0.93[CEU][hapmap]
rs1512381	0.93[CEU][hapmap]
rs2890818	0.92[CEU][hapmap]
rs3817202	0.86[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3817208	0.83[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3817209	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3817210	0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4442186	0.81[CEU][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57325817	0.85[EUR][1000 genomes]
rs60000844	0.85[EUR][1000 genomes]
rs60499554	0.89[EUR][1000 genomes]
rs61002972	0.89[EUR][1000 genomes]
rs61499390	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7021243	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7030931	0.82[ASW][hapmap];0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7041517	0.85[EUR][1000 genomes]
rs7042493	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7042822	0.90[EUR][1000 genomes]
rs7048587	0.93[CHB][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv824846	chr9:8696594-8700222	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8683000-8706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:8693000-8699600	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:8693400-8706400	Weak transcription	Fetal Brain Male	brain
4	chr9:8693600-8697400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:8693800-8697800	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:8693800-8699800	Weak transcription	Brain Anterior Caudate	brain
7	chr9:8693800-8703400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:8693800-8706600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:8694400-8699400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:8695000-8697600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:8695200-8699800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:8695200-8699800	Weak transcription	Brain Angular Gyrus	brain
13	chr9:8695200-8704200	Weak transcription	Brain Substantia Nigra	brain
14	chr9:8695200-8711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:8695400-8700200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:8695400-8706800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:8695600-8697800	Weak transcription	Dnd41	blood
18	chr9:8696000-8698000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:8696000-8703600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:8696200-8698200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:8696200-8706600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:8696400-8697600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:8696400-8698200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:8696600-8698000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:8696800-8698200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:8696800-8706000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:8697000-8698200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:8697000-8699400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:8697000-8704200	Weak transcription	Fetal Kidney	kidney
30	chr9:8697200-8701600	Weak transcription	Fetal Lung	lung

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