Variant report

Variant	rs1434265
Chromosome Location	chr9:8693432-8693433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10122820	0.85[EUR][1000 genomes]
rs10125358	0.86[CEU][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.80[LWK][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10977250	0.87[CHB][hapmap];0.93[EUR][1000 genomes]
rs12115364	0.81[EUR][1000 genomes]
rs12336593	0.82[EUR][1000 genomes]
rs12685924	0.81[CHD][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1337805	0.86[CEU][hapmap]
rs1368981	0.83[CHD][hapmap];0.86[MEX][hapmap];0.87[EUR][1000 genomes]
rs1368982	0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1415724	1.00[CEU][hapmap]
rs1434264	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1512380	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1512381	1.00[CEU][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs16928221	0.86[CEU][hapmap]
rs16928238	0.86[CEU][hapmap]
rs16928282	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs2890818	1.00[CEU][hapmap]
rs3817202	0.87[CHB][hapmap];0.88[EUR][1000 genomes]
rs3817208	0.93[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs3817209	0.86[CEU][hapmap];0.87[CHB][hapmap];0.89[EUR][1000 genomes]
rs3817210	0.93[CHB][hapmap];0.89[EUR][1000 genomes]
rs4442186	0.83[EUR][1000 genomes]
rs57325817	0.95[EUR][1000 genomes]
rs59292968	0.83[EUR][1000 genomes]
rs60000844	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60499554	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61002972	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7021243	1.00[CEU][hapmap];0.93[CHB][hapmap];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7030931	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7040154	0.81[CEU][hapmap]
rs7041517	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7042493	1.00[EUR][1000 genomes]
rs7042822	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7048587	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs72698256	0.86[EUR][1000 genomes]
rs72700351	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8679800-8696400	Weak transcription	Ovary	ovary
2	chr9:8680000-8694800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:8682000-8694800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:8683000-8706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:8683400-8696000	Weak transcription	Fetal Lung	lung
6	chr9:8686400-8693600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:8690400-8695000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:8691000-8693800	Enhancers	Brain Substantia Nigra	brain
9	chr9:8691200-8693800	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:8691200-8693800	Enhancers	Brain Hippocampus Middle	brain
11	chr9:8691800-8693600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:8692200-8693600	Weak transcription	Fetal Kidney	kidney
13	chr9:8692200-8696200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:8692400-8697000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:8692600-8693800	Enhancers	Brain Angular Gyrus	brain
16	chr9:8692800-8693800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr9:8692800-8696000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:8693000-8693800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:8693000-8693800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:8693000-8693800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr9:8693000-8693800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:8693000-8693800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:8693000-8693800	Enhancers	Fetal Brain Female	brain
24	chr9:8693000-8699600	Enhancers	Primary hematopoietic stem cells	blood
25	chr9:8693200-8693600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr9:8693200-8693600	Weak transcription	Brain Anterior Caudate	brain
27	chr9:8693200-8693800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr9:8693200-8695200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr9:8693400-8693800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr9:8693400-8693800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr9:8693400-8694400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:8693400-8695000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:8693400-8706400	Weak transcription	Fetal Brain Male	brain

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