Variant report

Variant	rs12336593
Chromosome Location	chr9:8671600-8671601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10122820	0.95[EUR][1000 genomes]
rs10124836	0.82[EUR][1000 genomes]
rs10125358	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs10815923	0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[ASN][1000 genomes]
rs12685924	0.80[CEU][hapmap]
rs1337805	0.86[CEU][hapmap]
rs1368981	0.86[CEU][hapmap]
rs1368982	0.86[CEU][hapmap]
rs1434264	0.82[EUR][1000 genomes]
rs1434265	0.82[EUR][1000 genomes]
rs16928221	0.86[CEU][hapmap]
rs16928238	0.86[CEU][hapmap]
rs57325817	0.87[EUR][1000 genomes]
rs60000844	0.87[EUR][1000 genomes]
rs60499554	0.81[EUR][1000 genomes]
rs61002972	0.81[EUR][1000 genomes]
rs7021243	0.81[EUR][1000 genomes]
rs7030931	0.82[EUR][1000 genomes]
rs7040154	0.93[CEU][hapmap]
rs7041517	0.87[EUR][1000 genomes]
rs7042493	0.82[EUR][1000 genomes]
rs7042822	0.82[EUR][1000 genomes]
rs7048587	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs72700324	0.83[EUR][1000 genomes]
rs72700331	0.81[EUR][1000 genomes]
rs72700351	0.90[EUR][1000 genomes]
rs7859849	0.87[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7868744	0.83[EUR][1000 genomes]
rs9886794	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8660800-8672400	Weak transcription	Brain Germinal Matrix	brain
2	chr9:8661400-8677400	Weak transcription	Brain Angular Gyrus	brain
3	chr9:8667000-8672400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:8668000-8672600	Enhancers	Fetal Brain Female	brain
5	chr9:8668800-8672600	Enhancers	Fetal Brain Male	brain
6	chr9:8669800-8677800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:8670400-8675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:8671000-8673200	Weak transcription	Brain Anterior Caudate	brain
9	chr9:8671000-8673200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:8671000-8677200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:8671200-8671600	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:8671200-8673200	Weak transcription	Brain Substantia Nigra	brain
13	chr9:8671600-8674800	Enhancers	Brain Hippocampus Middle	brain

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