Variant report

Variant	rs10122820
Chromosome Location	chr9:8673884-8673885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10124836	0.81[EUR][1000 genomes]
rs10125358	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10977250	0.82[EUR][1000 genomes]
rs12115364	0.80[EUR][1000 genomes]
rs12336593	0.95[EUR][1000 genomes]
rs12685924	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1368981	0.83[EUR][1000 genomes]
rs1368982	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1434264	0.85[EUR][1000 genomes]
rs1434265	0.85[EUR][1000 genomes]
rs16928238	0.81[EUR][1000 genomes]
rs57325817	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59292968	0.82[EUR][1000 genomes]
rs60000844	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60499554	0.84[EUR][1000 genomes]
rs61002972	0.84[EUR][1000 genomes]
rs7021243	0.84[EUR][1000 genomes]
rs7030931	0.85[EUR][1000 genomes]
rs7041517	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7042493	0.85[EUR][1000 genomes]
rs7042822	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7048587	0.89[EUR][1000 genomes]
rs72698256	0.82[EUR][1000 genomes]
rs72700324	0.85[EUR][1000 genomes]
rs72700331	0.83[EUR][1000 genomes]
rs72700351	0.90[EUR][1000 genomes]
rs7868744	0.83[EUR][1000 genomes]
rs9886794	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8661400-8677400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:8669800-8677800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:8670400-8675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:8671000-8677200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:8671600-8674800	Enhancers	Brain Hippocampus Middle	brain
6	chr9:8673000-8674000	Enhancers	Fetal Brain Female	brain
7	chr9:8673000-8675800	Enhancers	Fetal Brain Male	brain
8	chr9:8673200-8674000	Enhancers	Brain Anterior Caudate	brain
9	chr9:8673200-8675200	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:8673600-8676200	Enhancers	Fetal Heart	heart
11	chr9:8673800-8674000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:8673800-8674000	Enhancers	Brain Substantia Nigra	brain
13	chr9:8673800-8674000	Enhancers	Fetal Muscle Leg	muscle
14	chr9:8673800-8674000	Enhancers	Ovary	ovary
15	chr9:8673800-8674200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:8673800-8678600	Weak transcription	Brain Germinal Matrix	brain

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