Variant report

Variant	rs1337805
Chromosome Location	chr9:8630084-8630085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:8628676..8630702-chr9:8633940..8636402,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10125358	0.86[CEU][hapmap]
rs10758985	0.86[JPT][hapmap]
rs12115364	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12336593	0.86[CEU][hapmap]
rs12682677	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12685924	0.82[CEU][hapmap]
rs12686075	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12686078	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1368981	0.87[CEU][hapmap]
rs1368982	0.88[CEU][hapmap]
rs1415724	0.86[CEU][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.90[EUR][1000 genomes]
rs1434264	0.86[CEU][hapmap]
rs1434265	0.86[CEU][hapmap]
rs1512380	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1512381	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16928221	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.91[EUR][1000 genomes]
rs16928238	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2890818	0.85[CEU][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.90[EUR][1000 genomes]
rs56150041	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56244411	0.81[AMR][1000 genomes]
rs56883748	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57726817	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59292968	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60686483	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs67775498	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7021243	0.92[CEU][hapmap]
rs7030931	0.86[CEU][hapmap]
rs7040154	0.93[CEU][hapmap]
rs7048587	0.86[CEU][hapmap]
rs72698256	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72700324	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72700331	0.83[EUR][1000 genomes]
rs7868744	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892230	chr9:8569186-8643259	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8615400-8632000	Weak transcription	Fetal Brain Male	brain
2	chr9:8616800-8648000	Weak transcription	Fetal Kidney	kidney
3	chr9:8622000-8648600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:8623400-8647800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:8625400-8636800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:8626800-8631600	Weak transcription	Fetal Brain Female	brain
7	chr9:8627800-8630400	Enhancers	Brain Angular Gyrus	brain
8	chr9:8628000-8632000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:8628400-8630400	Enhancers	Brain Substantia Nigra	brain
10	chr9:8628400-8643600	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:8628600-8631400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:8628600-8637200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:8628800-8644000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:8628800-8644200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:8629000-8632600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:8629000-8633000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:8629200-8630200	Enhancers	Brain Cingulate Gyrus	brain
18	chr9:8629400-8634000	Strong transcription	Fetal Lung	lung
19	chr9:8629600-8632600	Weak transcription	Brain Anterior Caudate	brain
20	chr9:8629800-8630200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:8629800-8631400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:8629800-8632000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:8629800-8633600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:8629800-8651600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:8630000-8630800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr9:8630000-8640800	Weak transcription	Fetal Heart	heart

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