Variant report

Variant	rs16929681
Chromosome Location	chr12:26089339-26089340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26088715..26091033-chr12:26109828..26112264,2	MCF-7	breast:
2	chr12:26088641..26091375-chr12:26093087..26096585,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123094	Chromatin interaction
ENSG00000246695	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1183253	0.80[CEU][hapmap]
rs12322003	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1390324	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16929602	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16929615	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16929655	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16929667	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16929669	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16929684	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs16929780	0.84[CHB][hapmap]
rs16929815	0.87[GIH][hapmap]
rs16929860	0.83[GIH][hapmap]
rs2054889	0.81[CEU][hapmap]
rs4485193	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4963644	0.84[CHB][hapmap]
rs4963930	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4963931	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4963932	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4963933	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4963935	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4963941	0.84[EUR][1000 genomes]
rs4963947	0.84[CHB][hapmap]
rs55706441	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55920249	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57563237	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73073022	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73074805	0.90[EUR][1000 genomes]
rs73074809	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73074810	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73074813	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73074823	0.90[EUR][1000 genomes]
rs73088141	0.85[EUR][1000 genomes]
rs73088153	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73088155	0.86[EUR][1000 genomes]
rs73088172	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73292753	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7953605	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26085400-26110600	Weak transcription	Aorta	Aorta
2	chr12:26086800-26095000	Weak transcription	NHDF-Ad	bronchial
3	chr12:26086800-26110600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26087800-26090000	Weak transcription	Fetal Lung	lung
5	chr12:26088400-26089400	Enhancers	Fetal Heart	heart
6	chr12:26088400-26089400	Enhancers	HSMMtube	muscle
7	chr12:26088600-26089600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr12:26088600-26090200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:26088600-26090600	Enhancers	Brain Anterior Caudate	brain
10	chr12:26088600-26091200	Enhancers	Fetal Kidney	kidney
11	chr12:26088800-26090200	Enhancers	Brain Substantia Nigra	brain
12	chr12:26089000-26090800	Enhancers	Brain Cingulate Gyrus	brain
13	chr12:26089200-26090200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr12:26089200-26090200	Enhancers	Ovary	ovary
15	chr12:26089200-26090400	Enhancers	Brain Hippocampus Middle	brain

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