Variant report

Variant	rs16929684
Chromosome Location	chr12:26089503-26089504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1183253	0.80[CEU][hapmap];0.87[CHB][hapmap]
rs16929681	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs2054889	0.87[CEU][hapmap]
rs7953605	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16929684	ST8SIA1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26085400-26110600	Weak transcription	Aorta	Aorta
2	chr12:26086800-26095000	Weak transcription	NHDF-Ad	bronchial
3	chr12:26086800-26110600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26087800-26090000	Weak transcription	Fetal Lung	lung
5	chr12:26088600-26089600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr12:26088600-26090200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:26088600-26090600	Enhancers	Brain Anterior Caudate	brain
8	chr12:26088600-26091200	Enhancers	Fetal Kidney	kidney
9	chr12:26088800-26090200	Enhancers	Brain Substantia Nigra	brain
10	chr12:26089000-26090800	Enhancers	Brain Cingulate Gyrus	brain
11	chr12:26089200-26090200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr12:26089200-26090200	Enhancers	Ovary	ovary
13	chr12:26089200-26090400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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