Variant report

Variant	rs16930901
Chromosome Location	chr9:13777972-13777973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10961241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961242	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12339562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343062	1.00[AMR][1000 genomes]
rs12347390	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353139	1.00[AMR][1000 genomes]
rs16930846	1.00[AMR][1000 genomes]
rs16930903	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16930905	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16930920	1.00[AMR][1000 genomes]
rs28649273	1.00[AMR][1000 genomes]
rs28651252	1.00[AMR][1000 genomes]
rs28710082	1.00[AMR][1000 genomes]
rs28824872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28825398	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56166354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892591	chr9:13763734-13828594	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13758200-13787200	Weak transcription	Aorta	Aorta
2	chr9:13777000-13779600	Enhancers	Fetal Muscle Leg	muscle
3	chr9:13777400-13778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:13777600-13778000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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