Variant report

Variant	rs16930920
Chromosome Location	chr9:13787508-13787509
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10961241	1.00[AMR][1000 genomes]
rs10961242	1.00[AMR][1000 genomes]
rs12002489	1.00[EUR][1000 genomes]
rs12005535	1.00[EUR][1000 genomes]
rs12339562	1.00[AMR][1000 genomes]
rs12343062	1.00[AMR][1000 genomes]
rs12347390	1.00[AMR][1000 genomes]
rs12353139	1.00[AMR][1000 genomes]
rs16930846	1.00[AMR][1000 genomes]
rs16930901	1.00[AMR][1000 genomes]
rs16930903	1.00[AMR][1000 genomes]
rs16930905	1.00[AMR][1000 genomes]
rs1969937	1.00[EUR][1000 genomes]
rs1969939	1.00[EUR][1000 genomes]
rs28649273	1.00[AMR][1000 genomes]
rs28651252	1.00[AMR][1000 genomes]
rs28710082	1.00[AMR][1000 genomes]
rs28824872	1.00[AMR][1000 genomes]
rs28825398	1.00[AMR][1000 genomes]
rs528841	1.00[EUR][1000 genomes]
rs55716496	1.00[EUR][1000 genomes]
rs56145825	1.00[EUR][1000 genomes]
rs56166354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57153569	1.00[EUR][1000 genomes]
rs591153	1.00[EUR][1000 genomes]
rs59355338	1.00[EUR][1000 genomes]
rs59592609	1.00[EUR][1000 genomes]
rs598697	1.00[EUR][1000 genomes]
rs666487	1.00[EUR][1000 genomes]
rs7025657	1.00[EUR][1000 genomes]
rs73416910	1.00[EUR][1000 genomes]
rs73419185	1.00[EUR][1000 genomes]
rs73648007	1.00[EUR][1000 genomes]
rs73650630	1.00[EUR][1000 genomes]
rs73650632	1.00[EUR][1000 genomes]
rs73650634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892591	chr9:13763734-13828594	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13779000-13791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13786200-13787600	Enhancers	Left Ventricle	heart
3	chr9:13786200-13787600	Enhancers	HSMM	muscle
4	chr9:13786200-13787800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:13786200-13788000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:13786400-13787600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:13786600-13787800	Enhancers	Fetal Brain Female	brain
8	chr9:13787000-13787600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:13787000-13787600	Flanking Active TSS	Fetal Heart	heart
10	chr9:13787000-13787600	Flanking Active TSS	Right Atrium	heart
11	chr9:13787000-13788000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:13787000-13788000	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr9:13787000-13788000	Flanking Active TSS	NHLF	lung
14	chr9:13787000-13788200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:13787000-13788200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:13787200-13787600	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr9:13787200-13787600	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr9:13787200-13787600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:13787200-13787600	Enhancers	Colon Smooth Muscle	Colon
20	chr9:13787200-13787600	Enhancers	Duodenum Mucosa	Duodenum
21	chr9:13787200-13787600	Flanking Active TSS	NHDF-Ad	bronchial
22	chr9:13787200-13787800	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
23	chr9:13787200-13787800	Flanking Active TSS	Aorta	Aorta
24	chr9:13787200-13787800	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr9:13787200-13787800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:13787200-13787800	Enhancers	HUVEC	blood vessel
27	chr9:13787200-13788000	Active TSS	Brain Substantia Nigra	brain
28	chr9:13787200-13788000	Flanking Active TSS	Fetal Lung	lung
29	chr9:13787200-13788000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr9:13787200-13788000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr9:13787200-13788400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:13787200-13788400	Enhancers	Fetal Stomach	stomach
33	chr9:13787400-13787800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:13787400-13787800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:13787400-13787800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:13787400-13787800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:13787400-13787800	Flanking Active TSS	Fetal Kidney	kidney
38	chr9:13787400-13787800	Active TSS	Fetal Muscle Trunk	muscle
39	chr9:13787400-13787800	Flanking Active TSS	Fetal Muscle Leg	muscle
40	chr9:13787400-13787800	Active TSS	Ovary	ovary
41	chr9:13787400-13787800	Active TSS	Right Ventricle	heart
42	chr9:13787400-13787800	Enhancers	HepG2	liver
43	chr9:13787400-13787800	Flanking Active TSS	NH-A	brain
44	chr9:13787400-13788000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:13787400-13788000	Active TSS	Brain Angular Gyrus	brain
46	chr9:13787400-13788000	Active TSS	Brain Cingulate Gyrus	brain
47	chr9:13787400-13788000	Active TSS	Psoas Muscle	Psoas
48	chr9:13787400-13788000	Active TSS	Stomach Smooth Muscle	stomach
49	chr9:13787400-13788000	Flanking Active TSS	HSMMtube	muscle
50	chr9:13787400-13788000	Bivalent/Poised TSS	Osteobl	bone

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