Variant report

Variant	rs591153
Chromosome Location	chr9:13661371-13661372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16930920	1.00[EUR][1000 genomes]
rs528841	1.00[EUR][1000 genomes]
rs55716496	1.00[EUR][1000 genomes]
rs56145825	1.00[EUR][1000 genomes]
rs56166354	1.00[EUR][1000 genomes]
rs59355338	1.00[EUR][1000 genomes]
rs59592609	1.00[EUR][1000 genomes]
rs598697	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs666487	1.00[EUR][1000 genomes]
rs7025657	1.00[EUR][1000 genomes]
rs73648007	1.00[EUR][1000 genomes]
rs73650630	1.00[EUR][1000 genomes]
rs73650632	1.00[EUR][1000 genomes]
rs73650634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3481975	chr9:13661102-13661399	Active TSS Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3481976	chr9:13661102-13661399	Active TSS Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs591153	CXorf61	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13660800-13661400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:13660800-13661400	Active TSS	Right Atrium	heart
3	chr9:13660800-13661600	Enhancers	Colon Smooth Muscle	Colon
4	chr9:13661000-13661400	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr9:13661000-13661400	Active TSS	Osteobl	bone
6	chr9:13661200-13665600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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