Variant report

Variant	rs56145825
Chromosome Location	chr9:13778662-13778663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10961223	1.00[AFR][1000 genomes]
rs12002489	1.00[EUR][1000 genomes]
rs12005535	1.00[EUR][1000 genomes]
rs16930920	1.00[EUR][1000 genomes]
rs1969937	1.00[EUR][1000 genomes]
rs1969939	1.00[EUR][1000 genomes]
rs528841	1.00[EUR][1000 genomes]
rs55716496	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56166354	1.00[EUR][1000 genomes]
rs56874646	1.00[AFR][1000 genomes]
rs57153569	1.00[EUR][1000 genomes]
rs591153	1.00[EUR][1000 genomes]
rs59355338	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59592609	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs598697	1.00[EUR][1000 genomes]
rs666487	1.00[EUR][1000 genomes]
rs7025657	1.00[EUR][1000 genomes]
rs73416910	1.00[EUR][1000 genomes]
rs73419185	1.00[EUR][1000 genomes]
rs73647698	1.00[AFR][1000 genomes]
rs73647702	1.00[AFR][1000 genomes]
rs73648007	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73650630	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73650632	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73650634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73650635	1.00[AFR][1000 genomes]
rs73650637	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892591	chr9:13763734-13828594	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13758200-13787200	Weak transcription	Aorta	Aorta
2	chr9:13777000-13779600	Enhancers	Fetal Muscle Leg	muscle
3	chr9:13777400-13778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:13778000-13779600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:13778000-13779600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:13778200-13779000	Enhancers	NH-A	brain
7	chr9:13778200-13779800	Enhancers	Fetal Heart	heart
8	chr9:13778400-13779000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:13778600-13779000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:13778600-13779000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:13778600-13779000	Flanking Active TSS	HSMM	muscle
12	chr9:13778600-13779200	Flanking Active TSS	HSMMtube	muscle
13	chr9:13778600-13779400	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links