Variant report

Variant	rs57153569
Chromosome Location	chr9:13804612-13804613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10453183	1.00[EUR][1000 genomes]
rs12002489	1.00[EUR][1000 genomes]
rs12005535	1.00[EUR][1000 genomes]
rs16930920	1.00[EUR][1000 genomes]
rs1969937	1.00[EUR][1000 genomes]
rs1969939	1.00[EUR][1000 genomes]
rs528841	1.00[EUR][1000 genomes]
rs55716496	1.00[EUR][1000 genomes]
rs56145825	1.00[EUR][1000 genomes]
rs56166354	1.00[EUR][1000 genomes]
rs59355338	1.00[EUR][1000 genomes]
rs59592609	1.00[EUR][1000 genomes]
rs598697	1.00[EUR][1000 genomes]
rs666487	1.00[EUR][1000 genomes]
rs7025657	1.00[EUR][1000 genomes]
rs73416910	1.00[EUR][1000 genomes]
rs73419185	1.00[EUR][1000 genomes]
rs73648007	1.00[EUR][1000 genomes]
rs73650630	1.00[EUR][1000 genomes]
rs73650632	1.00[EUR][1000 genomes]
rs73650634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892591	chr9:13763734-13828594	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv892592	chr9:13787648-13859052	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13803000-13804800	Enhancers	Fetal Lung	lung
2	chr9:13803800-13805000	Enhancers	HUVEC	blood vessel
3	chr9:13804000-13804800	Enhancers	Left Ventricle	heart
4	chr9:13804000-13804800	Enhancers	Right Atrium	heart
5	chr9:13804000-13804800	Enhancers	NH-A	brain
6	chr9:13804000-13805000	Enhancers	Fetal Heart	heart
7	chr9:13804200-13804800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:13804200-13810600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:13804600-13804800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:13804600-13804800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:13804600-13804800	Enhancers	Aorta	Aorta
12	chr9:13804600-13804800	Enhancers	HMEC	breast
13	chr9:13804600-13805000	Enhancers	NHEK	skin
14	chr9:13804600-13805200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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